-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_21/scaffold_21_11727544-11963451

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_49921-T1
Valid prediction for GlimmerHMM_glimmerT_49910-T1
Valid prediction for GeneMark_model.86510_t
Valid prediction for GeneMark_model.86487_t
Valid prediction for GeneMark_model.86530_t
Valid prediction for snap_scaffold_21-snap.2582-T1
Valid prediction for snap_scaffold_21-snap.2547-T1
Valid prediction for snap_scaffold_21-snap.2540-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for snap_scaffold_21-snap.2544-T1
Valid prediction for Augustus_model.g33493.t1
Valid prediction for snap_scaffold_21-snap.2551-T1
Couldn't classify 175110, 175276
Sorry, prediction pasa_asmbl_28951.p1 fails validation.
(CTG)	 CT	175110-175276	GT	AGG
(CTG)	 AG	175510-175603	GT	AGG
(GTG)	 AG	175912-176032	GT	GGG
(GTG)	 AG	176175-176294	GT	AGG
(GCA)	 AG	176649-176701	AC	GAA
-recovered pasa_asmbl_28951.p1, terminal, 176649, 176701
-recovered pasa_asmbl_28951.p1, internal, 175510, 175603
-recovered pasa_asmbl_28951.p1, internal, 175912, 176032
-recovered pasa_asmbl_28951.p1, internal, 176175, 176294
Valid prediction for GeneMark_model.86504_t
Valid prediction for GlimmerHMM_glimmerT_49905-T1
Valid prediction for GlimmerHMM_glimmerT_49899-T1
Valid prediction for snap_scaffold_21-snap.2548-T1
Valid prediction for snap_scaffold_21-snap.2558-T1
Valid prediction for GeneMark_model.86501_t
Valid prediction for GlimmerHMM_glimmerT_49897-T1
Couldn't classify 228793, 228858
Sorry, prediction pasa_asmbl_28953.p1 fails validation.
(ATG)	 GC	222174-222288	GT	TGG
(GAG)	 AG	222942-223403	GT	TGG
(CTC)	 AG	223511-223648	GT	CAG
(GTC)	 AG	224908-225022	GT	AGG
(TGA)	 AG	225152-225368	GT	AGG
(GGT)	 AG	225849-226007	GT	AGG
(GAG)	 AG	227625-227708	GT	AGG
(CTG)	 AG	228793-228858	AG	GCA
-recovered pasa_asmbl_28953.p1, initial, 222174, 222288
-recovered pasa_asmbl_28953.p1, internal, 222942, 223403
-recovered pasa_asmbl_28953.p1, internal, 223511, 223648
-recovered pasa_asmbl_28953.p1, internal, 224908, 225022
-recovered pasa_asmbl_28953.p1, internal, 225152, 225368
-recovered pasa_asmbl_28953.p1, internal, 225849, 226007
-recovered pasa_asmbl_28953.p1, internal, 227625, 227708
Valid prediction for snap_scaffold_21-snap.2587-T1
Valid prediction for snap_scaffold_21-snap.2579-T1
Couldn't classify 14640, 14756
Couldn't classify 18402, 18587
Sorry, prediction pasa_asmbl_28960.p1 fails validation.
(CTG)	 AG	14640-14756	GT	AGG
(TCT)	 AG	16085-16168	GT	AGG
(CTG)	 AG	17848-17985	GT	AGG
(AGT)	 AG	18402-18587	GT	TGG
-recovered pasa_asmbl_28960.p1, internal, 14640, 14756
-recovered pasa_asmbl_28960.p1, internal, 16085, 16168
-recovered pasa_asmbl_28960.p1, internal, 17848, 17985
-recovered pasa_asmbl_28960.p1, internal, 18402, 18587
Valid prediction for Augustus_model.g33478.t1
Valid prediction for GeneMark_model.86483_t
Valid prediction for snap_scaffold_21-snap.2592-T1
Valid prediction for snap_scaffold_21-snap.2590-T1
Valid prediction for GeneMark_model.86545_t
Valid prediction for GeneMark_model.86506_t
Valid prediction for GlimmerHMM_glimmerT_49929-T1
Valid prediction for GeneMark_model.86476_t
Valid prediction for snap_scaffold_21-snap.2567-T1
Valid prediction for GeneMark_model.86517_t
Valid prediction for GeneMark_model.86474_t
Valid prediction for GlimmerHMM_glimmerT_49906-T1
Valid prediction for snap_scaffold_21-snap.2593-T1
Valid prediction for GeneMark_model.86518_t
Valid prediction for GlimmerHMM_glimmerT_49922-T1
Valid prediction for GlimmerHMM_glimmerT_49901-T1
Valid prediction for snap_scaffold_21-snap.2595-T1
Valid prediction for GeneMark_model.86525_t
Valid prediction for GlimmerHMM_glimmerT_49917-T1
Valid prediction for Augustus_model.g33488.t1
Valid prediction for Augustus_model.g33486.t1
Valid prediction for Augustus_model.g33487.t1
Valid prediction for GeneMark_model.86536_t
Valid prediction for snap_scaffold_21-snap.2542-T1
Valid prediction for GeneMark_model.86535_t
Valid prediction for GeneMark_model.86523_t
Valid prediction for GlimmerHMM_glimmerT_49924-T1
Valid prediction for Augustus_model.g33484.t1
Valid prediction for Augustus_model.g33491.t1
Valid prediction for snap_scaffold_21-snap.2569-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for Augustus_model.g33477.t1
Valid prediction for GeneMark_model.86481_t
Valid prediction for GeneMark_model.86499_t
Valid prediction for GeneMark_model.86529_t
Valid prediction for snap_scaffold_21-snap.2536-T1
Valid prediction for GlimmerHMM_glimmerT_49908-T1
Valid prediction for snap_scaffold_21-snap.2585-T1
Valid prediction for GeneMark_model.86520_t
Valid prediction for snap_scaffold_21-snap.2572-T1
Valid prediction for GlimmerHMM_glimmerT_49918-T1
Valid prediction for GeneMark_model.86547_t
Valid prediction for GeneMark_model.86495_t
Valid prediction for GlimmerHMM_glimmerT_49927-T1
Valid prediction for snap_scaffold_21-snap.2563-T1
Valid prediction for GlimmerHMM_glimmerT_49928-T1
Couldn't classify 21830, 21951
Sorry, prediction pasa_asmbl_28945.p1 fails validation.
(GGA)	 GC	21830-21951	GT	AGG
(ACA)	 AG	22282-23644	AG	AGA
-recovered pasa_asmbl_28945.p1, terminal, 22282, 23644
Valid prediction for snap_scaffold_21-snap.2584-T1
Valid prediction for snap_scaffold_21-snap.2578-T1
Valid prediction for GeneMark_model.86533_t
Valid prediction for Augustus_model.g33481.t1
Valid prediction for snap_scaffold_21-snap.2574-T1
Valid prediction for Augustus_model.g33490.t1
Valid prediction for GeneMark_model.86513_t
Valid prediction for GeneMark_model.86497_t
Valid prediction for Augustus_model.g33497.t1
Valid prediction for GeneMark_model.86503_t
Valid prediction for GeneMark_model.86531_t
Valid prediction for snap_scaffold_21-snap.2560-T1
Couldn't classify 164895, 164945
Couldn't classify 165531, 165799
Sorry, prediction pasa_asmbl_28946.p1 fails validation.
(GGC)	 AT	164895-164945	GT	AGG
(AAC)	 AG	165312-165450	GT	CAG
(AGC)	 AG	165531-165799	GC	CAG
-recovered pasa_asmbl_28946.p1, internal, 165312, 165450
-recovered pasa_asmbl_28946.p1, internal, 165531, 165799
Valid prediction for GeneMark_model.86539_t
Valid prediction for GlimmerHMM_glimmerT_49912-T1
Valid prediction for Augustus_model.g33492.t1
Valid prediction for GeneMark_model.86527_t
Valid prediction for Augustus_model.g33494.t1
Valid prediction for snap_scaffold_21-snap.2565-T1
Valid prediction for GeneMark_model.86515_t
Valid prediction for GeneMark_model.86478_t
Valid prediction for GlimmerHMM_glimmerT_49923-T1
Valid prediction for GeneMark_model.86484_t
Valid prediction for GlimmerHMM_glimmerT_49920-T1
Valid prediction for Augustus_model.g33496.t1
Valid prediction for GlimmerHMM_glimmerT_49915-T1
Valid prediction for snap_scaffold_21-snap.2550-T1
Valid prediction for GeneMark_model.86542_t
Valid prediction for GeneMark_model.86480_t
Valid prediction for Augustus_model.g33482.t1
Valid prediction for GlimmerHMM_glimmerT_49902-T1
Valid prediction for snap_scaffold_21-snap.2545-T1
Valid prediction for GlimmerHMM_glimmerT_49911-T1
Couldn't classify 174651, 175007
Sorry, prediction pasa_asmbl_28950.p1 fails validation.
(GTT)	 GT	174651-175007	GC	AGG
Valid prediction for snap_scaffold_21-snap.2554-T1
Valid prediction for snap_scaffold_21-snap.2580-T1
Valid prediction for GeneMark_model.86508_t
Valid prediction for GeneMark_model.86492_t
Valid prediction for snap_scaffold_21-snap.2576-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_49909-T1
Valid prediction for Augustus_model.g33479.t1
Valid prediction for GeneMark_model.86540_t
Valid prediction for GeneMark_model.86507_t
Valid prediction for GeneMark_model.86516_t
Valid prediction for GlimmerHMM_glimmerT_49916-T1
Valid prediction for GlimmerHMM_glimmerT_49900-T1
Valid prediction for snap_scaffold_21-snap.2589-T1
Valid prediction for snap_scaffold_21-snap.2561-T1
Valid prediction for GeneMark_model.86479_t
Valid prediction for snap_scaffold_21-snap.2588-T1
Valid prediction for GeneMark_model.86498_t
Valid prediction for GlimmerHMM_glimmerT_49904-T1
Valid prediction for snap_scaffold_21-snap.2552-T1
Valid prediction for GeneMark_model.86490_t
Valid prediction for snap_scaffold_21-snap.2581-T1
Valid prediction for snap_scaffold_21-snap.2566-T1
Valid prediction for GeneMark_model.86544_t
Valid prediction for GeneMark_model.86534_t
Valid prediction for snap_scaffold_21-snap.2546-T1
Valid prediction for GeneMark_model.86505_t
Valid prediction for GlimmerHMM_glimmerT_49919-T1
Valid prediction for GeneMark_model.86511_t
Valid prediction for GeneMark_model.86524_t
Valid prediction for GeneMark_model.86477_t
Valid prediction for snap_scaffold_21-snap.2537-T1
Valid prediction for GeneMark_model.86546_t
Valid prediction for GeneMark_model.86512_t
Valid prediction for GeneMark_model.86482_t
Valid prediction for GeneMark_model.86543_t
Valid prediction for GeneMark_model.86502_t
Valid prediction for GlimmerHMM_glimmerT_49898-T1
Valid prediction for GlimmerHMM_glimmerT_49925-T1
Valid prediction for GlimmerHMM_glimmerT_49913-T1
Valid prediction for snap_scaffold_21-snap.2594-T1
Valid prediction for Augustus_model.g33480.t1
Valid prediction for snap_scaffold_21-snap.2549-T1
Valid prediction for snap_scaffold_21-snap.2557-T1
Valid prediction for snap_scaffold_21-snap.2573-T1
Valid prediction for GeneMark_model.86538_t
Valid prediction for GeneMark_model.86494_t
Valid prediction for Augustus_model.g33483.t1
Valid prediction for snap_scaffold_21-snap.2538-T1
Valid prediction for GeneMark_model.86541_t
Valid prediction for snap_scaffold_21-snap.2568-T1
Valid prediction for GeneMark_model.86486_t
Valid prediction for GlimmerHMM_glimmerT_49926-T1
Valid prediction for Augustus_model.g33495.t1
Valid prediction for GeneMark_model.86532_t
Valid prediction for GeneMark_model.86475_t
Valid prediction for snap_scaffold_21-snap.2583-T1
Valid prediction for snap_scaffold_21-snap.2535-T1
Valid prediction for GeneMark_model.86519_t
Valid prediction for snap_scaffold_21-snap.2543-T1
Valid prediction for snap_scaffold_21-snap.2577-T1
Valid prediction for GeneMark_model.86488_t
Valid prediction for Augustus_model.g33489.t1
Valid prediction for GlimmerHMM_glimmerT_49903-T1
Valid prediction for Augustus_model.g33485.t1
Valid prediction for GeneMark_model.86514_t
Valid prediction for snap_scaffold_21-snap.2571-T1
Valid prediction for GeneMark_model.86491_t
Valid prediction for GeneMark_model.86473_t
Valid prediction for GlimmerHMM_glimmerT_49914-T1
Valid prediction for snap_scaffold_21-snap.2541-T1
Valid prediction for snap_scaffold_21-snap.2586-T1
Valid prediction for GeneMark_model.86537_t
Valid prediction for snap_scaffold_21-snap.2575-T1
Valid prediction for snap_scaffold_21-snap.2553-T1
Valid prediction for snap_scaffold_21-snap.2555-T1
Valid prediction for GeneMark_model.86521_t
Valid prediction for GeneMark_model.86500_t
Valid prediction for snap_scaffold_21-snap.2539-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_21-snap.2562-T1
Valid prediction for GlimmerHMM_glimmerT_49907-T1
Valid prediction for snap_scaffold_21-snap.2570-T1
Valid prediction for GeneMark_model.86526_t
Valid prediction for GeneMark_model.86528_t
Valid prediction for GeneMark_model.86522_t
Valid prediction for GeneMark_model.86485_t
Valid prediction for GeneMark_model.86509_t
Valid prediction for snap_scaffold_21-snap.2564-T1
Valid prediction for GeneMark_model.86496_t
Valid prediction for snap_scaffold_21-snap.2556-T1
Valid prediction for GeneMark_model.86493_t
Valid prediction for snap_scaffold_21-snap.2591-T1
Valid prediction for snap_scaffold_21-snap.2559-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4393, rend_intergenic: 2528  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23644, rend_intergenic: 4612  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30167, rend_intergenic: 23668  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32042, rend_intergenic: 30541  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38464, rend_intergenic: 32104  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41288, rend_intergenic: 38497  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42813, rend_intergenic: 41313  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51798, rend_intergenic: 48124  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57155, rend_intergenic: 51829  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69124, rend_intergenic: 58740  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71883, rend_intergenic: 69369  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73687, rend_intergenic: 73082  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86439, rend_intergenic: 75194  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93300, rend_intergenic: 87941  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100740, rend_intergenic: 99512  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106781, rend_intergenic: 103317  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113268, rend_intergenic: 108085  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119340, rend_intergenic: 118720  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122277, rend_intergenic: 120057  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123440, rend_intergenic: 122596  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131560, rend_intergenic: 128396  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139233, rend_intergenic: 131761  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152632, rend_intergenic: 145542  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160673, rend_intergenic: 157704  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166135, rend_intergenic: 164347  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181696, rend_intergenic: 178350  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189064, rend_intergenic: 184740  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199130, rend_intergenic: 193270  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202844, rend_intergenic: 201035  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 209725, rend_intergenic: 204661  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 213880, rend_intergenic: 211377  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 230010, rend_intergenic: 224806  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 230630, rend_intergenic: 230199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 235908
-exon list size: 1085


building trellis

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27.9    
28.0    
28.1    
28.2    
28.2    
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28.5    
28.6    
28.7    
28.8    
28.9    
29.0    
29.1    
29.2    
29.3    
29.3    
29.4    
29.5    
29.6    
29.7    
29.8    
29.9    
30.0    
30.1    
30.2    
30.3    
30.4    
30.5    
30.5    
30.6    
30.7    
30.8    
30.9    
31.0    
31.1    
31.2    
31.3    
31.4    
31.5    
31.6    
31.6    
31.7    
31.8    
31.9    
32.0    
32.1    
32.2    
32.3    
32.4    
32.5    
32.6    
32.7    
32.8    
32.8    
32.9    
33.0    
33.1    
33.2    
33.3    
33.4    
33.5    
33.6    
33.7    
33.8    
33.9    
33.9    
34.0    
34.1    
34.2    
34.3    
34.4    
34.5    
34.6    
34.7    
34.8    
34.9    
35.0    
35.1    
35.1    
35.2    
35.3    
35.4    
35.5    
35.6    
35.7    
35.8    
35.9    
36.0    
36.1    
36.2    
36.2    
36.3    
36.4    
36.5    
36.6    
36.7    
36.8    
36.9    
37.0    
37.1    
37.2    
37.3    
37.4    
37.4    
37.5    
37.6    
37.7    
37.8    
37.9    
38.0    
38.1    
38.2    
38.3    
38.4    
38.5    
38.5    
38.6    
38.7    
38.8    
38.9    
39.0    
39.1    
39.2    
39.3    
39.4    
39.5    
39.6    
39.7    
39.7    
39.8    
39.9    
40.0    
40.1    
40.2    
40.3    
40.4    
40.5    
40.6    
40.7    
40.8    
40.8    
40.9    
41.0    
41.1    
41.2    
41.3    
41.4    
41.5    
41.6    
41.7    
41.8    
41.9    
42.0    
42.0    
42.1    
42.2    
42.3    
42.4    
42.5    
42.6    
42.7    
42.8    
42.9    
43.0    
43.1    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.7    
43.8    
43.9    
44.0    
44.1    
44.2    
44.3    
44.3    
44.4    
44.5    
44.6    
44.7    
44.8    
44.9    
45.0    
45.1    
45.2    
45.3    
45.4    
45.4    
45.5    
45.6    
45.7    
45.8    
45.9    
46.0    
46.1    
46.2    
46.3    
46.4    
46.5    
46.6    
46.6    
46.7    
46.8    
46.9    
47.0    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.7    
47.7    
47.8    
47.9    
48.0    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
48.9    
48.9    
49.0    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.0    
50.0    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
51.0    
51.1    
51.1    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.2    
52.3    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.3    
53.4    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.1    
54.2    
54.3    
54.4    
54.5    
54.6    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.3    
55.4    
55.5    
55.6    
55.7    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
56.9    
57.0    
57.1    
57.2    
57.3    
57.4    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.0    
58.1    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.3    
60.3    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.5    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.6    
62.6    
62.7    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.8    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.5    
64.6    
64.7    
64.8    
64.9    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.4    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.5    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.8    
71.9    
72.0    
72.1    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
73.9    
74.0    
74.1    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.3    
76.4    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.7    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
79.9    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.3    
83.3    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.7    
86.8    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.5    
92.6    
92.7    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.7    
94.8    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 54 predictions from path traversal
Error with prediction: snap lend_intergenic: 4393, rend_intergenic: 2528  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23644, rend_intergenic: 4612  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30167, rend_intergenic: 23668  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32042, rend_intergenic: 30541  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38464, rend_intergenic: 32104  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41288, rend_intergenic: 38497  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42813, rend_intergenic: 41313  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51798, rend_intergenic: 48124  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57155, rend_intergenic: 51829  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69124, rend_intergenic: 58740  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71883, rend_intergenic: 69369  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73687, rend_intergenic: 73082  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86439, rend_intergenic: 75194  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93300, rend_intergenic: 87941  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100740, rend_intergenic: 99512  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106781, rend_intergenic: 103317  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113268, rend_intergenic: 108085  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119340, rend_intergenic: 118720  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122277, rend_intergenic: 120057  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123440, rend_intergenic: 122596  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131560, rend_intergenic: 128396  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139233, rend_intergenic: 131761  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152632, rend_intergenic: 145542  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160673, rend_intergenic: 157704  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 166135, rend_intergenic: 164347  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181696, rend_intergenic: 178350  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189064, rend_intergenic: 184740  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199130, rend_intergenic: 193270  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202844, rend_intergenic: 201035  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 209725, rend_intergenic: 204661  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 213880, rend_intergenic: 211377  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 230010, rend_intergenic: 224806  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 230630, rend_intergenic: 230199  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 24 predictions persist after filtering for low support