-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_21/scaffold_21_11247982-11544046

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for HiQ_model.g33447.t1
Valid prediction for snap_scaffold_21-snap.2448-T1
Valid prediction for GlimmerHMM_glimmerT_49842-T1
Valid prediction for Augustus_model.g33457.t1
Valid prediction for pasa_asmbl_28928.p1
Valid prediction for GeneMark_model.86331_t
Valid prediction for GeneMark_model.86382_t
Valid prediction for GeneMark_model.86405_t
Valid prediction for Augustus_model.g33449.t1
Valid prediction for GlimmerHMM_glimmerT_49846-T1
Valid prediction for GeneMark_model.86355_t
Valid prediction for snap_scaffold_21-snap.2455-T1
Valid prediction for GlimmerHMM_glimmerT_49868-T1
Valid prediction for snap_scaffold_21-snap.2461-T1
Valid prediction for GlimmerHMM_glimmerT_49855-T1
Valid prediction for GeneMark_model.86373_t
Valid prediction for Augustus_model.g33455.t1
Valid prediction for Augustus_model.g33448.t1
Valid prediction for snap_scaffold_21-snap.2483-T1
Valid prediction for GeneMark_model.86402_t
Couldn't classify 68662, 68820
Sorry, prediction pasa_asmbl_28955.p1 fails validation.
(GCA)	 CA	68662-68820	GT	GGG
(GTG)	 AG	68949-69079	GT	AGG
(TAT)	 AG	69163-69253	GT	AGG
(GTG)	 AG	70124-70208	GT	AGG
(GTG)	 AG	70321-70397	GT	AGG
(GTG)	 AG	70591-70699	GT	ATG
(CTA)	 AG	70894-71001	GT	TGG
(AGG)	 AG	71483-71571	GT	TGG
(GTT)	 AG	71959-72099	GT	TAG
(GCG)	 AG	72259-72401	GT	TGG
(GAG)	 AG	72795-72919	GT	AGG
(GAA)	 AG	73058-73248	GT	AGG
(ATC)	 AG	73454-73525	GC	GAG
-recovered pasa_asmbl_28955.p1, terminal, 73454, 73525
-recovered pasa_asmbl_28955.p1, internal, 68949, 69079
-recovered pasa_asmbl_28955.p1, internal, 69163, 69253
-recovered pasa_asmbl_28955.p1, internal, 70124, 70208
-recovered pasa_asmbl_28955.p1, internal, 70321, 70397
-recovered pasa_asmbl_28955.p1, internal, 70591, 70699
-recovered pasa_asmbl_28955.p1, internal, 70894, 71001
-recovered pasa_asmbl_28955.p1, internal, 71483, 71571
-recovered pasa_asmbl_28955.p1, internal, 71959, 72099
-recovered pasa_asmbl_28955.p1, internal, 72259, 72401
-recovered pasa_asmbl_28955.p1, internal, 72795, 72919
-recovered pasa_asmbl_28955.p1, internal, 73058, 73248
-recovered pasa_asmbl_28955.p1, internal, 73454, 73525
Valid prediction for GlimmerHMM_glimmerT_49844-T1
Valid prediction for GlimmerHMM_glimmerT_49863-T1
Valid prediction for snap_scaffold_21-snap.2486-T1
Valid prediction for snap_scaffold_21-snap.2492-T1
Valid prediction for Augustus_model.g33450.t1
Valid prediction for snap_scaffold_21-snap.2441-T1
Valid prediction for GeneMark_model.86404_t
Valid prediction for GeneMark_model.86339_t
Valid prediction for GeneMark_model.86372_t
Valid prediction for snap_scaffold_21-snap.2478-T1
Valid prediction for snap_scaffold_21-snap.2440-T1
Valid prediction for pasa_asmbl_28929.p1
Valid prediction for snap_scaffold_21-snap.2457-T1
Valid prediction for GlimmerHMM_glimmerT_49859-T1
Valid prediction for snap_scaffold_21-snap.2476-T1
Valid prediction for GeneMark_model.86407_t
Valid prediction for Augustus_model.g33456.t1
Valid prediction for GeneMark_model.86347_t
Valid prediction for snap_scaffold_21-snap.2445-T1
Valid prediction for GlimmerHMM_glimmerT_49847-T1
Valid prediction for snap_scaffold_21-snap.2490-T1
Couldn't classify 143155, 143417
Couldn't classify 143655, 144270
Sorry, prediction pasa_asmbl_28940.p1 fails validation.
(CTC)	 CT	143155-143417	GT	AGG
(GTT)	 AG	143655-144270	AG	ACA
Valid prediction for GlimmerHMM_glimmerT_49845-T1
Valid prediction for snap_scaffold_21-snap.2456-T1
Valid prediction for snap_scaffold_21-snap.2449-T1
Couldn't classify 88470, 88650
Couldn't classify 89932, 91193
Sorry, prediction pasa_asmbl_28934.p1 fails validation.
(GCT)	 GC	88470-88650	GT	AGG
(GTA)	 AG	89932-91193	GA	GGG
Valid prediction for GlimmerHMM_glimmerT_49840-T1
Valid prediction for snap_scaffold_21-snap.2465-T1
Valid prediction for snap_scaffold_21-snap.2467-T1
Valid prediction for Augustus_model.g33459.t1
Valid prediction for GeneMark_model.86375_t
Valid prediction for snap_scaffold_21-snap.2479-T1
Valid prediction for GeneMark_model.86351_t
Valid prediction for GeneMark_model.86341_t
Valid prediction for snap_scaffold_21-snap.2450-T1
Valid prediction for GlimmerHMM_glimmerT_49841-T1
Valid prediction for snap_scaffold_21-snap.2462-T1
Valid prediction for GeneMark_model.86411_t
Valid prediction for GlimmerHMM_glimmerT_49853-T1
Couldn't classify 163330, 163506
Sorry, prediction GeneMark_model.86367_t fails validation.
(AGA)	 AG	163330-163506	GT	AGG
(ACA)	 AG	163629-163647	GG	GAG
-recovered GeneMark_model.86367_t, terminal, 163629, 163647
-recovered GeneMark_model.86367_t, internal, 163330, 163506
Valid prediction for GeneMark_model.86359_t
Valid prediction for snap_scaffold_21-snap.2491-T1
Valid prediction for CodingQuarry_transcript_32686-T1
Valid prediction for GeneMark_model.86357_t
Couldn't classify 80535, 80591
Sorry, prediction pasa_asmbl_28933.p1 fails validation.
(GCA)	 AA	80535-80591	GT	GGG
(GAG)	 AG	80894-81151	CT	GAC
-recovered pasa_asmbl_28933.p1, terminal, 80894, 81151
Valid prediction for GlimmerHMM_glimmerT_49867-T1
Valid prediction for GeneMark_model.86353_t
Valid prediction for GeneMark_model.86391_t
Valid prediction for Augustus_model.g33451.t1
Valid prediction for GlimmerHMM_glimmerT_49858-T1
Valid prediction for snap_scaffold_21-snap.2484-T1
Valid prediction for snap_scaffold_21-snap.2439-T1
Valid prediction for snap_scaffold_21-snap.2459-T1
Valid prediction for GeneMark_model.86365_t
Couldn't classify 137768, 140794
Couldn't classify 142659, 142809
Sorry, prediction pasa_asmbl_28938.p1 fails validation.
(AGT)	 CC	137768-140794	GC	AGG
(ACT)	 AG	142439-142500	GT	AGG
(AGA)	 AG	142659-142809	CT	CCC
-recovered pasa_asmbl_28938.p1, internal, 142439, 142500
Valid prediction for GlimmerHMM_glimmerT_49865-T1
Valid prediction for snap_scaffold_21-snap.2473-T1
Valid prediction for GeneMark_model.86413_t
Valid prediction for GlimmerHMM_glimmerT_49849-T1
Valid prediction for GeneMark_model.86400_t
Valid prediction for GlimmerHMM_glimmerT_49860-T1
Valid prediction for GeneMark_model.86386_t
Valid prediction for CodingQuarry_transcript_32685-T1
Valid prediction for snap_scaffold_21-snap.2435-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_21-snap.2443-T1
Valid prediction for GeneMark_model.86340_t
Valid prediction for GeneMark_model.86346_t
Valid prediction for Augustus_model.g33454.t1
Valid prediction for GeneMark_model.86388_t
Valid prediction for snap_scaffold_21-snap.2444-T1
Valid prediction for GlimmerHMM_glimmerT_49861-T1
Valid prediction for snap_scaffold_21-snap.2487-T1
Valid prediction for GeneMark_model.86352_t
Valid prediction for GeneMark_model.86342_t
Valid prediction for snap_scaffold_21-snap.2454-T1
Couldn't classify 229508, 229636
Sorry, prediction GeneMark_model.86384_t fails validation.
(ACT)	 AG	229508-229636	GT	CTG
(GGC)	 AG	229810-229884	GT	AGG
(GAG)	 AG	229906-229981	GG	AGG
-recovered GeneMark_model.86384_t, terminal, 229906, 229981
-recovered GeneMark_model.86384_t, internal, 229508, 229636
-recovered GeneMark_model.86384_t, internal, 229810, 229884
Valid prediction for GeneMark_model.86336_t
Valid prediction for GeneMark_model.86398_t
Valid prediction for GeneMark_model.86345_t
Valid prediction for GlimmerHMM_glimmerT_49856-T1
Valid prediction for snap_scaffold_21-snap.2446-T1
Valid prediction for GeneMark_model.86394_t
Valid prediction for GeneMark_model.86409_t
Valid prediction for GeneMark_model.86396_t
Valid prediction for Augustus_model.g33458.t1
Valid prediction for snap_scaffold_21-snap.2451-T1
Valid prediction for GeneMark_model.86349_t
Valid prediction for GeneMark_model.86379_t
Valid prediction for GeneMark_model.86344_t
Valid prediction for snap_scaffold_21-snap.2438-T1
Valid prediction for GeneMark_model.86334_t
Valid prediction for CodingQuarry_transcript_32687-T1
Valid prediction for GlimmerHMM_glimmerT_49862-T1
Valid prediction for snap_scaffold_21-snap.2471-T1
Valid prediction for GeneMark_model.86370_t
Valid prediction for GlimmerHMM_glimmerT_49851-T1
Valid prediction for GeneMark_model.86363_t
Valid prediction for GlimmerHMM_glimmerT_49843-T1
Valid prediction for GeneMark_model.86361_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.86399_t
Valid prediction for GlimmerHMM_glimmerT_49869-T1
Valid prediction for GeneMark_model.86414_t
Valid prediction for GlimmerHMM_glimmerT_49866-T1
Valid prediction for GeneMark_model.86348_t
Valid prediction for GlimmerHMM_glimmerT_49838-T1
Valid prediction for HiQ_model.g33443.t1
Valid prediction for GeneMark_model.86401_t
Valid prediction for snap_scaffold_21-snap.2458-T1
Valid prediction for snap_scaffold_21-snap.2489-T1
Valid prediction for Augustus_model.g33460.t1
Valid prediction for snap_scaffold_21-snap.2466-T1
Valid prediction for GeneMark_model.86369_t
Valid prediction for GlimmerHMM_glimmerT_49854-T1
Valid prediction for GeneMark_model.86360_t
Valid prediction for snap_scaffold_21-snap.2472-T1
Valid prediction for GeneMark_model.86381_t
Valid prediction for snap_scaffold_21-snap.2431-T1
Valid prediction for GeneMark_model.86358_t
Couldn't classify 290178, 290252
Sorry, prediction pasa_asmbl_28128.p1 fails validation.
(CAG)	 AA	290178-290252	GT	AGG
(GAG)	 AG	290639-290721	GT	AAG
(TCA)	 AG	290831-290927	GT	CGG
(CAT)	 AG	291247-291415	GT	AGG
(TAA)	 AG	292325-292434	AC	GAA
-recovered pasa_asmbl_28128.p1, terminal, 292325, 292434
-recovered pasa_asmbl_28128.p1, internal, 290639, 290721
-recovered pasa_asmbl_28128.p1, internal, 290831, 290927
-recovered pasa_asmbl_28128.p1, internal, 291247, 291415
Valid prediction for HiQ_model.g33446.t1
Valid prediction for HiQ_model.g33444.t1
Couldn't classify 138520, 138583
Sorry, prediction GeneMark_model.86366_t fails validation.
(GAC)	 AG	138520-138583	GT	CGG
(AGG)	 AG	138684-138806	GT	CAG
(CGA)	 AG	139121-139170	GT	GAG
(AGA)	 AG	139274-139351	GT	AAG
(GGG)	 AG	139375-139386	GT	AGG
(AGA)	 AG	139445-139459	GT	GCG
(AGA)	 AG	139589-139615	GT	GAG
(GGA)	 AG	139823-139874	GT	TTG
(AGT)	 AG	139913-140098	AG	AGA
-recovered GeneMark_model.86366_t, terminal, 139913, 140098
-recovered GeneMark_model.86366_t, internal, 138520, 138583
-recovered GeneMark_model.86366_t, internal, 138684, 138806
-recovered GeneMark_model.86366_t, internal, 139121, 139170
-recovered GeneMark_model.86366_t, internal, 139274, 139351
-recovered GeneMark_model.86366_t, internal, 139375, 139386
-recovered GeneMark_model.86366_t, internal, 139445, 139459
-recovered GeneMark_model.86366_t, internal, 139589, 139615
-recovered GeneMark_model.86366_t, internal, 139823, 139874
Valid prediction for snap_scaffold_21-snap.2460-T1
Valid prediction for Augustus_model.g33452.t1
Valid prediction for snap_scaffold_21-snap.2480-T1
Valid prediction for GeneMark_model.86338_t
Valid prediction for GeneMark_model.86408_t
Valid prediction for GeneMark_model.86406_t
Valid prediction for snap_scaffold_21-snap.2477-T1
Valid prediction for GeneMark_model.86395_t
Valid prediction for Augustus_model.g33453.t1
Valid prediction for GeneMark_model.86393_t
Valid prediction for GeneMark_model.86333_t
Valid prediction for GeneMark_model.86364_t
Valid prediction for GeneMark_model.86371_t
Valid prediction for GlimmerHMM_glimmerT_49852-T1
Valid prediction for GeneMark_model.86377_t
Valid prediction for GeneMark_model.86389_t
Valid prediction for GeneMark_model.86376_t
Valid prediction for snap_scaffold_21-snap.2469-T1
Valid prediction for GeneMark_model.86337_t
Valid prediction for snap_scaffold_21-snap.2452-T1
Valid prediction for GeneMark_model.86356_t
Valid prediction for GeneMark_model.86335_t
Valid prediction for pasa_asmbl_28140.p1
Valid prediction for snap_scaffold_21-snap.2453-T1
Valid prediction for snap_scaffold_21-snap.2475-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GeneMark_model.86390_t
Valid prediction for GeneMark_model.86374_t
Valid prediction for pasa_asmbl_28133.p1
Valid prediction for GeneMark_model.86350_t
Valid prediction for GlimmerHMM_glimmerT_49839-T1
Valid prediction for snap_scaffold_21-snap.2447-T1
Valid prediction for snap_scaffold_21-snap.2463-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_21-snap.2436-T1
Couldn't classify 279328, 279361
Couldn't classify 280785, 280804
Sorry, prediction pasa_asmbl_28136.p1 fails validation.
(CCA)	 TC	279328-279361	GT	CGG
(TTT)	 AG	279448-279590	GT	AGG
(GCC)	 AG	279700-279892	GT	AGG
(AAA)	 AG	279984-280092	GT	AGG
(ATC)	 AG	280500-280600	GT	AGG
(GAG)	 AG	280785-280804	AC	GGA
-recovered pasa_asmbl_28136.p1, internal, 279448, 279590
-recovered pasa_asmbl_28136.p1, internal, 279700, 279892
-recovered pasa_asmbl_28136.p1, internal, 279984, 280092
-recovered pasa_asmbl_28136.p1, internal, 280500, 280600
Valid prediction for snap_scaffold_21-snap.2468-T1
Valid prediction for snap_scaffold_21-snap.2474-T1
Valid prediction for snap_scaffold_21-snap.2470-T1
Valid prediction for GeneMark_model.86330_t
Valid prediction for GlimmerHMM_glimmerT_49857-T1
Valid prediction for snap_scaffold_21-snap.2481-T1
Valid prediction for GlimmerHMM_glimmerT_49870-T1
Valid prediction for snap_scaffold_21-snap.2437-T1
Valid prediction for GeneMark_model.86385_t
Valid prediction for GeneMark_model.86332_t
Valid prediction for snap_scaffold_21-snap.2434-T1
Valid prediction for snap_scaffold_21-snap.2432-T1
Valid prediction for Augustus_model.g33442.t1
Valid prediction for snap_scaffold_21-snap.2485-T1
Valid prediction for GeneMark_model.86392_t
Valid prediction for snap_scaffold_21-snap.2482-T1
Valid prediction for HiQ_model.g33445.t1
Valid prediction for snap_scaffold_21-snap.2488-T1
Couldn't classify 286709, 286782
Sorry, prediction pasa_asmbl_28131.p1 fails validation.
(ATG)	 AC	284371-284773	GT	TGG
(GTA)	 AG	286709-286782	AC	GTA
-recovered pasa_asmbl_28131.p1, initial, 284371, 284773
Valid prediction for GlimmerHMM_glimmerT_49864-T1
Valid prediction for snap_scaffold_21-snap.2442-T1
Couldn't classify 82838, 82858
Sorry, prediction GeneMark_model.86383_t fails validation.
(GAG)	 AG	82838-82858	GT	AGG
(GGG)	 AG	82880-82930	GT	AAG
(TGG)	 AG	82972-83073	GT	AGG
(AGG)	 AG	83096-83107	GT	GAG
(TGG)	 AG	83130-83186	GT	GAG
(AGA)	 AG	83212-83244	GT	GAG
(AGG)	 AG	83267-83284	GT	GGG
(TAG)	 AG	83308-83353	TG	AGT
-recovered GeneMark_model.86383_t, terminal, 83308, 83353
-recovered GeneMark_model.86383_t, internal, 82838, 82858
-recovered GeneMark_model.86383_t, internal, 82880, 82930
-recovered GeneMark_model.86383_t, internal, 82972, 83073
-recovered GeneMark_model.86383_t, internal, 83096, 83107
-recovered GeneMark_model.86383_t, internal, 83130, 83186
-recovered GeneMark_model.86383_t, internal, 83212, 83244
-recovered GeneMark_model.86383_t, internal, 83267, 83284
Valid prediction for GeneMark_model.86403_t
Valid prediction for snap_scaffold_21-snap.2433-T1
Valid prediction for GeneMark_model.86412_t
Valid prediction for GlimmerHMM_glimmerT_49850-T1
Valid prediction for CodingQuarry_transcript_32684-T1
Valid prediction for GeneMark_model.86343_t
Valid prediction for snap_scaffold_21-snap.2464-T1
Valid prediction for GeneMark_model.86410_t
Valid prediction for GeneMark_model.86354_t
Valid prediction for GeneMark_model.86378_t
Valid prediction for GeneMark_model.86380_t
Valid prediction for GlimmerHMM_glimmerT_49848-T1
Valid prediction for GeneMark_model.86387_t
Valid prediction for snap_scaffold_21-snap.2430-T1
Valid prediction for GeneMark_model.86368_t
Valid prediction for GeneMark_model.86362_t
Valid prediction for GeneMark_model.86397_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 23561, rend_intergenic: 21985  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23837, rend_intergenic: 23630  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73525, rend_intergenic: 70587  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107251, rend_intergenic: 102670  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130236, rend_intergenic: 128446  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138423, rend_intergenic: 131794  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148617, rend_intergenic: 138450  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154927, rend_intergenic: 150747  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155911, rend_intergenic: 155772  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165402, rend_intergenic: 156125  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171917, rend_intergenic: 167842  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173314, rend_intergenic: 172207  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186865, rend_intergenic: 174110  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196602, rend_intergenic: 187179  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 205535, rend_intergenic: 197231  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 229676, rend_intergenic: 207536  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 233560, rend_intergenic: 229863  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 252000, rend_intergenic: 233762  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 256503, rend_intergenic: 252435  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 267318, rend_intergenic: 259797  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 275665, rend_intergenic: 268835  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 294719, rend_intergenic: 276428  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 296065
-exon list size: 1191


building trellis

0.1    
0.2    
0.3    
0.3    
0.4    
0.5    
0.6    
0.7    
0.8    
0.8    
0.9    
1.0    
1.1    
1.2    
1.3    
1.3    
1.4    
1.5    
1.6    
1.7    
1.8    
1.8    
1.9    
2.0    
2.1    
2.2    
2.3    
2.3    
2.4    
2.5    
2.6    
2.7    
2.8    
2.8    
2.9    
3.0    
3.1    
3.2    
3.3    
3.4    
3.4    
3.5    
3.6    
3.7    
3.8    
3.9    
3.9    
4.0    
4.1    
4.2    
4.3    
4.4    
4.4    
4.5    
4.6    
4.7    
4.8    
4.9    
4.9    
5.0    
5.1    
5.2    
5.3    
5.4    
5.4    
5.5    
5.6    
5.7    
5.8    
5.9    
6.0    
6.0    
6.1    
6.2    
6.3    
6.4    
6.5    
6.5    
6.6    
6.7    
6.8    
6.9    
7.0    
7.0    
7.1    
7.2    
7.3    
7.4    
7.5    
7.5    
7.6    
7.7    
7.8    
7.9    
8.0    
8.0    
8.1    
8.2    
8.3    
8.4    
8.5    
8.5    
8.6    
8.7    
8.8    
8.9    
9.0    
9.1    
9.1    
9.2    
9.3    
9.4    
9.5    
9.6    
9.6    
9.7    
9.8    
9.9    
10.0    
10.1    
10.1    
10.2    
10.3    
10.4    
10.5    
10.6    
10.6    
10.7    
10.8    
10.9    
11.0    
11.1    
11.1    
11.2    
11.3    
11.4    
11.5    
11.6    
11.7    
11.7    
11.8    
11.9    
12.0    
12.1    
12.2    
12.2    
12.3    
12.4    
12.5    
12.6    
12.7    
12.7    
12.8    
12.9    
13.0    
13.1    
13.2    
13.2    
13.3    
13.4    
13.5    
13.6    
13.7    
13.7    
13.8    
13.9    
14.0    
14.1    
14.2    
14.2    
14.3    
14.4    
14.5    
14.6    
14.7    
14.8    
14.8    
14.9    
15.0    
15.1    
15.2    
15.3    
15.3    
15.4    
15.5    
15.6    
15.7    
15.8    
15.8    
15.9    
16.0    
16.1    
16.2    
16.3    
16.3    
16.4    
16.5    
16.6    
16.7    
16.8    
16.8    
16.9    
17.0    
17.1    
17.2    
17.3    
17.4    
17.4    
17.5    
17.6    
17.7    
17.8    
17.9    
17.9    
18.0    
18.1    
18.2    
18.3    
18.4    
18.4    
18.5    
18.6    
18.7    
18.8    
18.9    
18.9    
19.0    
19.1    
19.2    
19.3    
19.4    
19.4    
19.5    
19.6    
19.7    
19.8    
19.9    
19.9    
20.0    
20.1    
20.2    
20.3    
20.4    
20.5    
20.5    
20.6    
20.7    
20.8    
20.9    
21.0    
21.0    
21.1    
21.2    
21.3    
21.4    
21.5    
21.5    
21.6    
21.7    
21.8    
21.9    
22.0    
22.0    
22.1    
22.2    
22.3    
22.4    
22.5    
22.5    
22.6    
22.7    
22.8    
22.9    
23.0    
23.1    
23.1    
23.2    
23.3    
23.4    
23.5    
23.6    
23.6    
23.7    
23.8    
23.9    
24.0    
24.1    
24.1    
24.2    
24.3    
24.4    
24.5    
24.6    
24.6    
24.7    
24.8    
24.9    
25.0    
25.1    
25.1    
25.2    
25.3    
25.4    
25.5    
25.6    
25.6    
25.7    
25.8    
25.9    
26.0    
26.1    
26.2    
26.2    
26.3    
26.4    
26.5    
26.6    
26.7    
26.7    
26.8    
26.9    
27.0    
27.1    
27.2    
27.2    
27.3    
27.4    
27.5    
27.6    
27.7    
27.7    
27.8    
27.9    
28.0    
28.1    
28.2    
28.2    
28.3    
28.4    
28.5    
28.6    
28.7    
28.8    
28.8    
28.9    
29.0    
29.1    
29.2    
29.3    
29.3    
29.4    
29.5    
29.6    
29.7    
29.8    
29.8    
29.9    
30.0    
30.1    
30.2    
30.3    
30.3    
30.4    
30.5    
30.6    
30.7    
30.8    
30.8    
30.9    
31.0    
31.1    
31.2    
31.3    
31.3    
31.4    
31.5    
31.6    
31.7    
31.8    
31.9    
31.9    
32.0    
32.1    
32.2    
32.3    
32.4    
32.4    
32.5    
32.6    
32.7    
32.8    
32.9    
32.9    
33.0    
33.1    
33.2    
33.3    
33.4    
33.4    
33.5    
33.6    
33.7    
33.8    
33.9    
33.9    
34.0    
34.1    
34.2    
34.3    
34.4    
34.5    
34.5    
34.6    
34.7    
34.8    
34.9    
35.0    
35.0    
35.1    
35.2    
35.3    
35.4    
35.5    
35.5    
35.6    
35.7    
35.8    
35.9    
36.0    
36.0    
36.1    
36.2    
36.3    
36.4    
36.5    
36.5    
36.6    
36.7    
36.8    
36.9    
37.0    
37.0    
37.1    
37.2    
37.3    
37.4    
37.5    
37.6    
37.6    
37.7    
37.8    
37.9    
38.0    
38.1    
38.1    
38.2    
38.3    
38.4    
38.5    
38.6    
38.6    
38.7    
38.8    
38.9    
39.0    
39.1    
39.1    
39.2    
39.3    
39.4    
39.5    
39.6    
39.6    
39.7    
39.8    
39.9    
40.0    
40.1    
40.2    
40.2    
40.3    
40.4    
40.5    
40.6    
40.7    
40.7    
40.8    
40.9    
41.0    
41.1    
41.2    
41.2    
41.3    
41.4    
41.5    
41.6    
41.7    
41.7    
41.8    
41.9    
42.0    
42.1    
42.2    
42.2    
42.3    
42.4    
42.5    
42.6    
42.7    
42.7    
42.8    
42.9    
43.0    
43.1    
43.2    
43.3    
43.3    
43.4    
43.5    
43.6    
43.7    
43.8    
43.8    
43.9    
44.0    
44.1    
44.2    
44.3    
44.3    
44.4    
44.5    
44.6    
44.7    
44.8    
44.8    
44.9    
45.0    
45.1    
45.2    
45.3    
45.3    
45.4    
45.5    
45.6    
45.7    
45.8    
45.9    
45.9    
46.0    
46.1    
46.2    
46.3    
46.4    
46.4    
46.5    
46.6    
46.7    
46.8    
46.9    
46.9    
47.0    
47.1    
47.2    
47.3    
47.4    
47.4    
47.5    
47.6    
47.7    
47.8    
47.9    
47.9    
48.0    
48.1    
48.2    
48.3    
48.4    
48.4    
48.5    
48.6    
48.7    
48.8    
48.9    
49.0    
49.0    
49.1    
49.2    
49.3    
49.4    
49.5    
49.5    
49.6    
49.7    
49.8    
49.9    
50.0    
50.0    
50.1    
50.2    
50.3    
50.4    
50.5    
50.5    
50.6    
50.7    
50.8    
50.9    
51.0    
51.0    
51.1    
51.2    
51.3    
51.4    
51.5    
51.6    
51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.1    
52.2    
52.3    
52.4    
52.5    
52.6    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.1    
53.2    
53.3    
53.4    
53.5    
53.6    
53.6    
53.7    
53.8    
53.9    
54.0    
54.1    
54.1    
54.2    
54.3    
54.4    
54.5    
54.6    
54.7    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.2    
55.3    
55.4    
55.5    
55.6    
55.7    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.3    
57.3    
57.4    
57.5    
57.6    
57.7    
57.8    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
59.8    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.4    
62.5    
62.6    
62.7    
62.8    
62.9    
63.0    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.0    
64.1    
64.2    
64.3    
64.4    
64.5    
64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.1    
68.2    
68.3    
68.4    
68.5    
68.6    
68.7    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.8    
71.9    
72.0    
72.1    
72.2    
72.3    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.8    
72.9    
73.0    
73.1    
73.2    
73.3    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
75.9    
76.0    
76.1    
76.2    
76.3    
76.4    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.5    
78.6    
78.7    
78.8    
78.9    
79.0    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.1    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.2    
83.3    
83.4    
83.5    
83.6    
83.7    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.3    
86.4    
86.5    
86.6    
86.7    
86.8    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.5    
92.6    
92.7    
92.8    
92.9    
93.0    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.2    
97.3    
97.4    
97.5    
97.6    
97.7    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.7    
98.8    
98.9    
99.0    
99.1    
99.2    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.7    
99.8    
99.9    
-found 60 predictions from path traversal
Error with prediction: snap lend_intergenic: 23561, rend_intergenic: 21985  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23837, rend_intergenic: 23630  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73525, rend_intergenic: 70587  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107251, rend_intergenic: 102670  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130236, rend_intergenic: 128446  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138423, rend_intergenic: 131794  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148617, rend_intergenic: 138450  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154927, rend_intergenic: 150747  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155911, rend_intergenic: 155772  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165402, rend_intergenic: 156125  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171917, rend_intergenic: 167842  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173314, rend_intergenic: 172207  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186865, rend_intergenic: 174110  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196602, rend_intergenic: 187179  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 205535, rend_intergenic: 197231  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 229676, rend_intergenic: 207536  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 233560, rend_intergenic: 229863  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 252000, rend_intergenic: 233762  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 256503, rend_intergenic: 252435  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 267318, rend_intergenic: 259797  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 275665, rend_intergenic: 268835  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 294719, rend_intergenic: 276428  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 22 predictions persist after filtering for low support