-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_21/scaffold_21_1-180371

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_21-snap.32-T1
Valid prediction for snap_scaffold_21-snap.7-T1
Valid prediction for snap_scaffold_21-snap.30-T1
Valid prediction for Augustus_model.g32161.t1
Valid prediction for GlimmerHMM_glimmerT_48138-T1
Valid prediction for snap_scaffold_21-snap.21-T1
Valid prediction for GeneMark_model.83706_t
Valid prediction for GeneMark_model.83719_t
Valid prediction for GeneMark_model.83714_t
Valid prediction for Augustus_model.g32154.t1
Valid prediction for GeneMark_model.83725_t
Valid prediction for GlimmerHMM_glimmerT_48112-T1
Valid prediction for snap_scaffold_21-snap.8-T1
Valid prediction for GeneMark_model.83704_t
Valid prediction for snap_scaffold_21-snap.13-T1
Valid prediction for GlimmerHMM_glimmerT_48121-T1
Valid prediction for GlimmerHMM_glimmerT_48128-T1
Valid prediction for GeneMark_model.83708_t
Valid prediction for GlimmerHMM_glimmerT_48119-T1
Valid prediction for Augustus_model.g32151.t1
Valid prediction for GeneMark_model.83712_t
Valid prediction for Augustus_model.g32155.t1
Valid prediction for GeneMark_model.83702_t
Valid prediction for Augustus_model.g32147.t1
Valid prediction for GlimmerHMM_glimmerT_48136-T1
Valid prediction for Augustus_model.g32162.t1
Valid prediction for Augustus_model.g32152.t1
Valid prediction for snap_scaffold_21-snap.25-T1
Valid prediction for GlimmerHMM_glimmerT_48116-T1
Valid prediction for Augustus_model.g32170.t1
Valid prediction for GlimmerHMM_glimmerT_48115-T1
Valid prediction for GlimmerHMM_glimmerT_48118-T1
Valid prediction for Augustus_model.g32159.t1
Valid prediction for GlimmerHMM_glimmerT_48125-T1
Valid prediction for Augustus_model.g32169.t1
Valid prediction for snap_scaffold_21-snap.31-T1
Couldn't classify 147622, 147924
Sorry, prediction pasa_asmbl_29044.p2 fails validation.
(CTT)	 CC	147622-147924	TC	GAT
Valid prediction for GeneMark_model.83721_t
Valid prediction for snap_scaffold_21-snap.16-T1
Valid prediction for snap_scaffold_21-snap.20-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GeneMark_model.83713_t
Valid prediction for GeneMark_model.83700_t
Valid prediction for snap_scaffold_21-snap.18-T1
Valid prediction for snap_scaffold_21-snap.35-T1
Valid prediction for Augustus_model.g32153.t1
Valid prediction for snap_scaffold_21-snap.15-T1
Valid prediction for GlimmerHMM_glimmerT_48123-T1
Valid prediction for snap_scaffold_21-snap.23-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_21-snap.29-T1
Valid prediction for GlimmerHMM_glimmerT_48132-T1
Valid prediction for GlimmerHMM_glimmerT_48134-T1
Valid prediction for snap_scaffold_21-snap.9-T1
Valid prediction for Augustus_model.g32156.t1
Valid prediction for Augustus_model.g32165.t1
Valid prediction for Augustus_model.g32163.t1
Valid prediction for snap_scaffold_21-snap.10-T1
Valid prediction for Augustus_model.g32143.t1
Valid prediction for snap_scaffold_21-snap.22-T1
Valid prediction for GeneMark_model.83705_t
Valid prediction for snap_scaffold_21-snap.14-T1
Valid prediction for snap_scaffold_21-snap.36-T1
Valid prediction for Augustus_model.g32171.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_48131-T1
Valid prediction for HiQ_model.g32149.t1
Valid prediction for GeneMark_model.83717_t
Valid prediction for snap_scaffold_21-snap.19-T1
Valid prediction for snap_scaffold_21-snap.33-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_48130-T1
Valid prediction for snap_scaffold_21-snap.24-T1
Valid prediction for GeneMark_model.83716_t
Valid prediction for snap_scaffold_21-snap.12-T1
Valid prediction for GeneMark_model.83703_t
Couldn't classify 146742, 146942
Couldn't classify 147145, 147438
Sorry, prediction pasa_asmbl_27295.p1 fails validation.
(AGA)	 TG	146742-146942	GT	AGG
(GAC)	 AG	147145-147438	TA	GGT
Valid prediction for Augustus_model.g32160.t1
Valid prediction for CodingQuarry_transcript_32350-T1
Valid prediction for snap_scaffold_21-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_48124-T1
Valid prediction for GeneMark_model.83723_t
Valid prediction for GeneMark_model.83726_t
Valid prediction for GlimmerHMM_glimmerT_48122-T1
Valid prediction for Augustus_model.g32139.t1
Valid prediction for Augustus_model.g32145.t1
Valid prediction for GeneMark_model.83695_t
Valid prediction for GeneMark_model.83709_t
Valid prediction for Augustus_model.g32172.t1
Couldn't classify 39863, 40309
Sorry, prediction pasa_asmbl_28267.p1 fails validation.
(GAC)	 AT	39863-40309	GC	GTG
Valid prediction for Augustus_model.g32164.t1
Valid prediction for snap_scaffold_21-snap.11-T1
Valid prediction for snap_scaffold_21-snap.17-T1
Valid prediction for pasa_asmbl_27289.p2
Valid prediction for GeneMark_model.83697_t
Valid prediction for GeneMark_model.83722_t
Valid prediction for snap_scaffold_21-snap.27-T1
Valid prediction for snap_scaffold_21-snap.1-T1
Valid prediction for snap_scaffold_21-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_48135-T1
Valid prediction for GlimmerHMM_glimmerT_48133-T1
Valid prediction for Augustus_model.g32167.t1
Valid prediction for Augustus_model.g32137.t1
Valid prediction for snap_scaffold_21-snap.5-T1
Valid prediction for Augustus_model.g32173.t1
Valid prediction for GlimmerHMM_glimmerT_48108-T1
Valid prediction for snap_scaffold_21-snap.26-T1
Valid prediction for GlimmerHMM_glimmerT_48137-T1
Valid prediction for Augustus_model.g32157.t1
Valid prediction for GlimmerHMM_glimmerT_48114-T1
Valid prediction for HiQ_model.g32141.t1
Valid prediction for GeneMark_model.83698_t
Valid prediction for Augustus_model.g32166.t1
Valid prediction for Augustus_model.g32150.t1
Valid prediction for GlimmerHMM_glimmerT_48106-T1
Valid prediction for GeneMark_model.83720_t
Valid prediction for GlimmerHMM_glimmerT_48113-T1
Valid prediction for Augustus_model.g32158.t1
Valid prediction for GlimmerHMM_glimmerT_48127-T1
Valid prediction for GeneMark_model.83701_t
Valid prediction for Augustus_model.g32140.t1
Valid prediction for GlimmerHMM_glimmerT_48129-T1
Valid prediction for Augustus_model.g32148.t1
Valid prediction for GlimmerHMM_glimmerT_48110-T1
Valid prediction for Augustus_model.g32142.t1
Valid prediction for GlimmerHMM_glimmerT_48109-T1
Valid prediction for snap_scaffold_21-snap.4-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for Augustus_model.g32138.t1
Valid prediction for GlimmerHMM_glimmerT_48111-T1
Valid prediction for snap_scaffold_21-snap.34-T1
Valid prediction for snap_scaffold_21-snap.28-T1
Couldn't classify 126462, 126809
Sorry, prediction pasa_asmbl_27297.p1 fails validation.
(ACT)	 TC	126462-126809	TC	AAT
Valid prediction for GlimmerHMM_glimmerT_48120-T1
Valid prediction for GeneMark_model.83715_t
Valid prediction for GlimmerHMM_glimmerT_48126-T1
Valid prediction for Augustus_model.g32144.t1
Valid prediction for snap_scaffold_21-snap.6-T1
Valid prediction for GeneMark_model.83699_t
Valid prediction for GlimmerHMM_glimmerT_48107-T1
Valid prediction for GlimmerHMM_glimmerT_48117-T1
Valid prediction for Augustus_model.g32146.t1
Valid prediction for Augustus_model.g32168.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 180371
-exon list size: 380


building trellis

0.3    
0.5    
0.8    
1.0    
1.3    
1.6    
1.8    
2.1    
2.4    
2.6    
2.9    
3.1    
3.4    
3.7    
3.9    
4.2    
4.5    
4.7    
5.0    
5.2    
5.5    
5.8    
6.0    
6.3    
6.5    
6.8    
7.1    
7.3    
7.6    
7.9    
8.1    
8.4    
8.6    
8.9    
9.2    
9.4    
9.7    
9.9    
10.2    
10.5    
10.7    
11.0    
11.3    
11.5    
11.8    
12.0    
12.3    
12.6    
12.8    
13.1    
13.4    
13.6    
13.9    
14.1    
14.4    
14.7    
14.9    
15.2    
15.4    
15.7    
16.0    
16.2    
16.5    
16.8    
17.0    
17.3    
17.5    
17.8    
18.1    
18.3    
18.6    
18.8    
19.1    
19.4    
19.6    
19.9    
20.2    
20.4    
20.7    
20.9    
21.2    
21.5    
21.7    
22.0    
22.3    
22.5    
22.8    
23.0    
23.3    
23.6    
23.8    
24.1    
24.3    
24.6    
24.9    
25.1    
25.4    
25.7    
25.9    
26.2    
26.4    
26.7    
27.0    
27.2    
27.5    
27.7    
28.0    
28.3    
28.5    
28.8    
29.1    
29.3    
29.6    
29.8    
30.1    
30.4    
30.6    
30.9    
31.2    
31.4    
31.7    
31.9    
32.2    
32.5    
32.7    
33.0    
33.2    
33.5    
33.8    
34.0    
34.3    
34.6    
34.8    
35.1    
35.3    
35.6    
35.9    
36.1    
36.4    
36.6    
36.9    
37.2    
37.4    
37.7    
38.0    
38.2    
38.5    
38.7    
39.0    
39.3    
39.5    
39.8    
40.1    
40.3    
40.6    
40.8    
41.1    
41.4    
41.6    
41.9    
42.1    
42.4    
42.7    
42.9    
43.2    
43.5    
43.7    
44.0    
44.2    
44.5    
44.8    
45.0    
45.3    
45.5    
45.8    
46.1    
46.3    
46.6    
46.9    
47.1    
47.4    
47.6    
47.9    
48.2    
48.4    
48.7    
49.0    
49.2    
49.5    
49.7    
50.0    
50.3    
50.5    
50.8    
51.0    
51.3    
51.6    
51.8    
52.1    
52.4    
52.6    
52.9    
53.1    
53.4    
53.7    
53.9    
54.2    
54.5    
54.7    
55.0    
55.2    
55.5    
55.8    
56.0    
56.3    
56.5    
56.8    
57.1    
57.3    
57.6    
57.9    
58.1    
58.4    
58.6    
58.9    
59.2    
59.4    
59.7    
59.9    
60.2    
60.5    
60.7    
61.0    
61.3    
61.5    
61.8    
62.0    
62.3    
62.6    
62.8    
63.1    
63.4    
63.6    
63.9    
64.1    
64.4    
64.7    
64.9    
65.2    
65.4    
65.7    
66.0    
66.2    
66.5    
66.8    
67.0    
67.3    
67.5    
67.8    
68.1    
68.3    
68.6    
68.8    
69.1    
69.4    
69.6    
69.9    
70.2    
70.4    
70.7    
70.9    
71.2    
71.5    
71.7    
72.0    
72.3    
72.5    
72.8    
73.0    
73.3    
73.6    
73.8    
74.1    
74.3    
74.6    
74.9    
75.1    
75.4    
75.7    
75.9    
76.2    
76.4    
76.7    
77.0    
77.2    
77.5    
77.7    
78.0    
78.3    
78.5    
78.8    
79.1    
79.3    
79.6    
79.8    
80.1    
80.4    
80.6    
80.9    
81.2    
81.4    
81.7    
81.9    
82.2    
82.5    
82.7    
83.0    
83.2    
83.5    
83.8    
84.0    
84.3    
84.6    
84.8    
85.1    
85.3    
85.6    
85.9    
86.1    
86.4    
86.6    
86.9    
87.2    
87.4    
87.7    
88.0    
88.2    
88.5    
88.7    
89.0    
89.3    
89.5    
89.8    
90.1    
90.3    
90.6    
90.8    
91.1    
91.4    
91.6    
91.9    
92.1    
92.4    
92.7    
92.9    
93.2    
93.5    
93.7    
94.0    
94.2    
94.5    
94.8    
95.0    
95.3    
95.5    
95.8    
96.1    
96.3    
96.6    
96.9    
97.1    
97.4    
97.6    
97.9    
98.2    
98.4    
98.7    
99.0    
99.2    
99.5    
99.7    
-found 43 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 39 predictions persist after filtering for low support