-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2099

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41955.t1
add_exon() Sorry, Augustus_model.g41955.t1 1004-1205-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 357, 372
Couldn't classify 1012, 1021
Sorry, prediction GeneMark_model.110033_t fails validation.
(AGG)	 AG	357-372	GT	CAG
(GAA)	 AG	473-610	GT	AGG
(ACT)	 AG	634-651	GT	AAG
(AGG)	 AG	722-727	GT	GAG
(GAG)	 AG	753-821	GT	GAG
(AGA)	 AG	853-873	GT	GAG
(GAG)	 AG	894-989	GT	GAG
(AGA)	 AG	1012-1021	GT	GGG
-recovered GeneMark_model.110033_t, internal, 357, 372
-recovered GeneMark_model.110033_t, internal, 473, 610
-recovered GeneMark_model.110033_t, internal, 634, 651
-recovered GeneMark_model.110033_t, internal, 722, 727
-recovered GeneMark_model.110033_t, internal, 753, 821
-recovered GeneMark_model.110033_t, internal, 853, 873
-recovered GeneMark_model.110033_t, internal, 894, 989
-recovered GeneMark_model.110033_t, internal, 1012, 1021
Couldn't classify 357, 659
Sorry, prediction snap_scaffold_2099-snap.1-T1 fails validation.
(AGG)	 AG	357-659	GT	AGG
(ACT)	 AG	687-825	AG	AGA
-recovered snap_scaffold_2099-snap.1-T1, terminal, 687, 825
-recovered snap_scaffold_2099-snap.1-T1, internal, 357, 659
Valid prediction for GlimmerHMM_glimmerT_62976-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62976-T1 357-663-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1586
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support