-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2096

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 64, 102
Couldn't classify 1526, 1575
Sorry, prediction GeneMark_model.110030_t fails validation.
(AGG)	 AG	64-102	GT	GTG
(GAC)	 AG	126-150	GT	TCG
(AGT)	 AG	827-1102	GT	AGG
(GAT)	 AG	1407-1502	GT	AGG
(GGG)	 AG	1526-1575	GT	AGG
-recovered GeneMark_model.110030_t, internal, 64, 102
-recovered GeneMark_model.110030_t, internal, 126, 150
-recovered GeneMark_model.110030_t, internal, 827, 1102
-recovered GeneMark_model.110030_t, internal, 1407, 1502
-recovered GeneMark_model.110030_t, internal, 1526, 1575
Valid prediction for GlimmerHMM_glimmerT_62974-T1
Couldn't classify 827, 1102
Couldn't classify 1407, 1502
Sorry, prediction Augustus_model.g41953.t1 fails validation.
(AGT)	 AG	827-1102	GT	AGG
(GAT)	 AG	1407-1502	GT	AGG
-recovered Augustus_model.g41953.t1, internal, 827, 1102
-recovered Augustus_model.g41953.t1, internal, 1407, 1502
Couldn't classify 839, 1102
Couldn't classify 1407, 1502
Sorry, prediction snap_scaffold_2096-snap.1-T1 fails validation.
(CTC)	 AG	839-1102	GT	AGG
(GAT)	 AG	1407-1502	GT	AGG
-recovered snap_scaffold_2096-snap.1-T1, internal, 839, 1102
-recovered snap_scaffold_2096-snap.1-T1, internal, 1407, 1502

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1589
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support