-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2094

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62973-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62973-T1 511-803-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 341, 390
Couldn't classify 1395, 1536
Sorry, prediction snap_scaffold_2094-snap.1-T1 fails validation.
(ACT)	 AG	341-390	GT	AAG
(ACA)	 AG	755-890	GT	GTG
(AGA)	 AG	935-1106	GT	TGG
(CGT)	 AG	1395-1536	GT	CGG
-recovered snap_scaffold_2094-snap.1-T1, internal, 341, 390
-recovered snap_scaffold_2094-snap.1-T1, internal, 755, 890
-recovered snap_scaffold_2094-snap.1-T1, internal, 935, 1106
-recovered snap_scaffold_2094-snap.1-T1, internal, 1395, 1536
Couldn't classify 1392, 1536
Sorry, prediction Augustus_model.g41952.t1 fails validation.
(ATG)	 CG	694-888	GT	CGG
(CAG)	 AG	1392-1536	GT	CGG
-recovered Augustus_model.g41952.t1, initial, 694, 888
-recovered Augustus_model.g41952.t1, internal, 1392, 1536
Couldn't classify 1392, 1536
Sorry, prediction GeneMark_model.110029_t fails validation.
(ATG)	 GC	748-845	GT	GCG
(AGA)	 AG	935-1106	GT	TGG
(CAG)	 AG	1392-1536	GT	CGG
-recovered GeneMark_model.110029_t, initial, 748, 845
-recovered GeneMark_model.110029_t, internal, 935, 1106
-recovered GeneMark_model.110029_t, internal, 1392, 1536

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1591
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support