-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2093

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 353, 408
Couldn't classify 1169, 1202
Sorry, prediction GeneMark_model.110028_t fails validation.
(AGC)	 AG	353-408	GT	CGG
(GGG)	 AG	466-572	GT	GGG
(GTT)	 AG	812-935	GT	AGG
(TTG)	 AG	1079-1145	GT	GGG
(TGT)	 AG	1169-1202	GT	AGG
-recovered GeneMark_model.110028_t, terminal, 812, 935
-recovered GeneMark_model.110028_t, internal, 353, 408
-recovered GeneMark_model.110028_t, internal, 466, 572
-recovered GeneMark_model.110028_t, internal, 812, 935
-recovered GeneMark_model.110028_t, internal, 1079, 1145
-recovered GeneMark_model.110028_t, internal, 1169, 1202
Valid prediction for GlimmerHMM_glimmerT_62972-T1
Valid prediction for Augustus_model.g41951.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 409, 580
Sorry, prediction snap_scaffold_2093-snap.1-T1 fails validation.
(TTG)	 AG	409-580	GT	CGG
(GTG)	 AG	649-712	GT	GGG
(GGG)	 AG	1406-1473	CA	GAC
-recovered snap_scaffold_2093-snap.1-T1, terminal, 1406, 1473
-recovered snap_scaffold_2093-snap.1-T1, internal, 409, 580
-recovered snap_scaffold_2093-snap.1-T1, internal, 649, 712

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1593
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support