-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2092

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 285, 440
Couldn't classify 1278, 1452
Sorry, prediction Augustus_model.g41950.t1 fails validation.
(GTC)	 AG	285-440	GT	CGG
(GTA)	 AG	1278-1452	GT	AGG
-recovered Augustus_model.g41950.t1, internal, 285, 440
-recovered Augustus_model.g41950.t1, internal, 1278, 1452
Couldn't classify 285, 440
Sorry, prediction GlimmerHMM_glimmerT_62971-T1 fails validation.
(GTC)	 AG	285-440	GT	CGG
(GTA)	 AG	1278-1456	AC	AAA
-recovered GlimmerHMM_glimmerT_62971-T1, terminal, 1278, 1456
-recovered GlimmerHMM_glimmerT_62971-T1, internal, 285, 440
Couldn't classify 285, 453
Sorry, prediction GeneMark_model.110027_t fails validation.
(GTC)	 AG	285-453	GC	CAG
(GAG)	 AG	968-988	GT	GAG
(GAG)	 AG	1012-1056	GT	AAG
(CAT)	 AG	1148-1171	GT	GAG
(AGC)	 AG	1297-1456	AC	AAA
-recovered GeneMark_model.110027_t, terminal, 1297, 1456
-recovered GeneMark_model.110027_t, internal, 285, 453
-recovered GeneMark_model.110027_t, internal, 968, 988
-recovered GeneMark_model.110027_t, internal, 1012, 1056
-recovered GeneMark_model.110027_t, internal, 1148, 1171
Couldn't classify 285, 440
Couldn't classify 1278, 1452
Sorry, prediction snap_scaffold_2092-snap.1-T1 fails validation.
(GTC)	 AG	285-440	GT	CGG
(GTA)	 AG	1278-1452	GT	AGG
-recovered snap_scaffold_2092-snap.1-T1, internal, 285, 440
-recovered snap_scaffold_2092-snap.1-T1, internal, 1278, 1452

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1593
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support