-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2091

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62969-T1
Couldn't classify 1, 72
Couldn't classify 1374, 1562
Sorry, prediction Augustus_model.g41949.t1 fails validation.
(AGA)	 GT	1-72	GT	AGG
(GTC)	 AG	276-368	GT	AGG
(GAG)	 AG	513-642	GT	AGG
(AGA)	 AG	997-1121	GT	AGG
(GAG)	 AG	1374-1562	GT	AGG
-recovered Augustus_model.g41949.t1, internal, 276, 368
-recovered Augustus_model.g41949.t1, internal, 513, 642
-recovered Augustus_model.g41949.t1, internal, 997, 1121
-recovered Augustus_model.g41949.t1, internal, 1374, 1562
Couldn't classify 276, 368
Sorry, prediction GlimmerHMM_glimmerT_62970-T1 fails validation.
(GTC)	 AG	276-368	GT	AGG
(GAG)	 AG	513-642	GT	AGG
(AGA)	 AG	997-1136	CG	AGC
-recovered GlimmerHMM_glimmerT_62970-T1, terminal, 997, 1136
-recovered GlimmerHMM_glimmerT_62970-T1, internal, 276, 368
-recovered GlimmerHMM_glimmerT_62970-T1, internal, 513, 642
Couldn't classify 285, 368
Couldn't classify 1374, 1562
Sorry, prediction pasa_asmbl_27286.p1 fails validation.
(GAG)	 AT	285-368	GT	AGG
(GAG)	 AG	513-642	GT	AGG
(AGA)	 AG	997-1121	GT	AGG
(GAG)	 AG	1374-1562	GT	AGG
-recovered pasa_asmbl_27286.p1, internal, 513, 642
-recovered pasa_asmbl_27286.p1, internal, 997, 1121
-recovered pasa_asmbl_27286.p1, internal, 1374, 1562
Couldn't classify 1374, 1562
Sorry, prediction snap_scaffold_2091-snap.1-T1 fails validation.
(ATG)	 AG	52-72	GT	AGG
(GTC)	 AG	276-368	GT	AGG
(GAG)	 AG	513-642	GT	AGG
(AGA)	 AG	997-1121	GT	AGG
(GAG)	 AG	1374-1562	GT	AGG
-recovered snap_scaffold_2091-snap.1-T1, initial, 52, 72
-recovered snap_scaffold_2091-snap.1-T1, internal, 52, 72
-recovered snap_scaffold_2091-snap.1-T1, internal, 276, 368
-recovered snap_scaffold_2091-snap.1-T1, internal, 513, 642
-recovered snap_scaffold_2091-snap.1-T1, internal, 997, 1121
-recovered snap_scaffold_2091-snap.1-T1, internal, 1374, 1562
Couldn't classify 19, 72
Couldn't classify 1369, 1562
Sorry, prediction GeneMark_model.110026_t fails validation.
(CAG)	 AG	19-72	GT	AGG
(AGG)	 AG	312-368	GT	AGG
(GAG)	 AG	513-642	GT	AGG
(AGA)	 AG	997-1078	GT	AAG
(AGA)	 AG	1252-1298	GT	AGG
(TAC)	 AG	1369-1562	GT	AGG
-recovered GeneMark_model.110026_t, terminal, 1252, 1298
-recovered GeneMark_model.110026_t, internal, 19, 72
-recovered GeneMark_model.110026_t, internal, 312, 368
-recovered GeneMark_model.110026_t, internal, 513, 642
-recovered GeneMark_model.110026_t, internal, 997, 1078
-recovered GeneMark_model.110026_t, internal, 1252, 1298
-recovered GeneMark_model.110026_t, internal, 1369, 1562

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1593
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support