-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_209

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 8719, 8886
Sorry, prediction Augustus_model.g40907.t1 fails validation.
(ATG)	 AG	6186-6214	GT	CAG
(GTG)	 AG	8719-8886	GT	AGG
-recovered Augustus_model.g40907.t1, initial, 6186, 6214
-recovered Augustus_model.g40907.t1, internal, 6186, 6214
-recovered Augustus_model.g40907.t1, internal, 8719, 8886
Couldn't classify 8719, 8872
Sorry, prediction GlimmerHMM_glimmerT_61508-T1 fails validation.
(ATG)	 GG	5588-6027	GT	GTG
(GTG)	 AG	8719-8872	GT	AGG
-recovered GlimmerHMM_glimmerT_61508-T1, initial, 5588, 6027
-recovered GlimmerHMM_glimmerT_61508-T1, internal, 8719, 8872
Valid prediction for GeneMark_model.106943_t
Valid prediction for GlimmerHMM_glimmerT_61507-T1
Valid prediction for snap_scaffold_209-snap.2-T1
add_exon() Sorry, snap_scaffold_209-snap.2-T1 5198-6012-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 816, 901
Sorry, prediction GeneMark_model.106944_t fails validation.
(TTC)	 AG	816-901	GT	AGG
(GGG)	 AG	926-994	GT	GAG
(AGG)	 AG	1030-1044	GT	AGG
(AGG)	 AG	3224-3245	AA	GAA
-recovered GeneMark_model.106944_t, terminal, 3224, 3245
-recovered GeneMark_model.106944_t, internal, 816, 901
-recovered GeneMark_model.106944_t, internal, 926, 994
-recovered GeneMark_model.106944_t, internal, 1030, 1044
Couldn't classify 8069, 8209
Sorry, prediction snap_scaffold_209-snap.1-T1 fails validation.
(ATG)	 GG	3324-3443	GT	AAG
(AGG)	 AG	8069-8209	GT	ATG
-recovered snap_scaffold_209-snap.1-T1, initial, 3324, 3443
-recovered snap_scaffold_209-snap.1-T1, internal, 8069, 8209
Valid prediction for GeneMark_model.106942_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6288, rend_intergenic: 5198  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9611
-exon list size: 31


building trellis

3.0    
6.1    
9.1    
12.1    
15.2    
18.2    
21.2    
24.2    
27.3    
30.3    
33.3    
36.4    
39.4    
42.4    
45.5    
48.5    
51.5    
54.5    
57.6    
60.6    
63.6    
66.7    
69.7    
72.7    
75.8    
78.8    
81.8    
84.8    
87.9    
90.9    
93.9    
97.0    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 6288, rend_intergenic: 5198  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support