-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2083

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.110019_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g41945.t1
Couldn't classify 556, 669
Couldn't classify 1514, 1586
Sorry, prediction snap_scaffold_2083-snap.1-T1 fails validation.
(CTA)	 AG	556-669	GT	AGG
(GAG)	 AG	825-926	GT	AGG
(TGC)	 AG	1304-1311	GT	AGG
(CTT)	 AG	1514-1586	GT	GTG
-recovered snap_scaffold_2083-snap.1-T1, terminal, 825, 926
-recovered snap_scaffold_2083-snap.1-T1, internal, 556, 669
-recovered snap_scaffold_2083-snap.1-T1, internal, 825, 926
-recovered snap_scaffold_2083-snap.1-T1, internal, 1304, 1311
-recovered snap_scaffold_2083-snap.1-T1, internal, 1514, 1586

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1600
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support