-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2081

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 559, 570
Couldn't classify 1558, 1569
Sorry, prediction GeneMark_model.110017_t fails validation.
(AGA)	 AG	559-570	GC	AGG
(AGA)	 AG	591-602	GC	AGG
(AGA)	 AG	625-681	GT	ACG
(GGG)	 AG	1206-1269	GT	GGG
(GGG)	 AG	1294-1352	GT	GGG
(GGG)	 AG	1385-1393	GT	GGG
(AAG)	 AG	1434-1442	GT	GGG
(GCA)	 AG	1470-1505	GT	GGG
(GGG)	 AG	1527-1535	GT	GGG
(TTG)	 AG	1558-1569	GT	GGG
-recovered GeneMark_model.110017_t, internal, 559, 570
-recovered GeneMark_model.110017_t, internal, 591, 602
-recovered GeneMark_model.110017_t, internal, 625, 681
-recovered GeneMark_model.110017_t, internal, 1206, 1269
-recovered GeneMark_model.110017_t, internal, 1294, 1352
-recovered GeneMark_model.110017_t, internal, 1385, 1393
-recovered GeneMark_model.110017_t, internal, 1434, 1442
-recovered GeneMark_model.110017_t, internal, 1470, 1505
-recovered GeneMark_model.110017_t, internal, 1527, 1535
-recovered GeneMark_model.110017_t, internal, 1558, 1569

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1601
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support