-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2080

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 256, 323
Sorry, prediction GeneMark_model.110016_t fails validation.
(CCT)	 AG	256-323	GT	AGG
(CTG)	 AG	1382-1564	GA	AAG
-recovered GeneMark_model.110016_t, terminal, 1382, 1564
-recovered GeneMark_model.110016_t, internal, 256, 323
Couldn't classify 157, 212
Couldn't classify 1243, 1435
Sorry, prediction snap_scaffold_2080-snap.1-T1 fails validation.
(AGC)	 AG	157-212	GT	TGG
(CTT)	 AG	1243-1435	GT	GGG
-recovered snap_scaffold_2080-snap.1-T1, internal, 157, 212
-recovered snap_scaffold_2080-snap.1-T1, internal, 1243, 1435

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1602
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support