-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_208

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106939_t
Couldn't classify 8018, 8032
Sorry, prediction GeneMark_model.106941_t fails validation.
(ATG)	 TC	6395-6399	GT	CAG
(GAG)	 AG	6532-6651	GT	GGG
(GAG)	 AG	6676-6705	GC	ATG
(GGG)	 AG	7578-7589	GT	GGG
(GAG)	 AG	7630-7710	GT	GTG
(AGA)	 AG	8018-8032	GT	GAG
-recovered GeneMark_model.106941_t, initial, 6395, 6399
-recovered GeneMark_model.106941_t, internal, 6532, 6651
-recovered GeneMark_model.106941_t, internal, 6676, 6705
-recovered GeneMark_model.106941_t, internal, 7578, 7589
-recovered GeneMark_model.106941_t, internal, 7630, 7710
-recovered GeneMark_model.106941_t, internal, 8018, 8032

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 9003, 9102
Sorry, prediction snap_scaffold_208-snap.1-T1 fails validation.
(ATG)	 GT	6870-6988	GT	AAG
(GGA)	 AG	9003-9102	GT	TGG
-recovered snap_scaffold_208-snap.1-T1, initial, 6870, 6988
-recovered snap_scaffold_208-snap.1-T1, internal, 9003, 9102
Couldn't classify 9003, 9102
Sorry, prediction Augustus_model.g40906.t1 fails validation.
(ATG)	 AC	6527-6621	GT	TGG
(GAA)	 AG	6857-6988	GT	AAG
(GGA)	 AG	9003-9102	GT	TGG
-recovered Augustus_model.g40906.t1, initial, 6527, 6621
-recovered Augustus_model.g40906.t1, internal, 6857, 6988
-recovered Augustus_model.g40906.t1, internal, 9003, 9102
Valid prediction for GlimmerHMM_glimmerT_61506-T1
Valid prediction for GeneMark_model.106938_t
Valid prediction for GeneMark_model.106940_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 9630
-exon list size: 34


building trellis

2.8    
5.6    
8.3    
11.1    
13.9    
16.7    
19.4    
22.2    
25.0    
27.8    
30.6    
33.3    
36.1    
38.9    
41.7    
44.4    
47.2    
50.0    
52.8    
55.6    
58.3    
61.1    
63.9    
66.7    
69.4    
72.2    
75.0    
77.8    
80.6    
83.3    
86.1    
88.9    
91.7    
94.4    
97.2    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support