-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2079

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1, 485
Sorry, prediction GlimmerHMM_glimmerT_62966-T1 fails validation.
(CTA)	 GA	1-485	AA	GAA
Couldn't classify 11, 310
Couldn't classify 1401, 1474
Sorry, prediction GeneMark_model.110015_t fails validation.
(CGA)	 AG	11-310	GT	CAG
(AGG)	 AG	1401-1474	GT	TAG
-recovered GeneMark_model.110015_t, internal, 11, 310
-recovered GeneMark_model.110015_t, internal, 1401, 1474
Couldn't classify 3, 372
Couldn't classify 1295, 1329
Sorry, prediction pasa_asmbl_27282.p1 fails validation.
(ATT)	 CT	3-372	GT	TGG
(ATG)	 AG	1295-1329	AG	TTA

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1602
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support