-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2078

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1518, 1577
Sorry, prediction GeneMark_model.110014_t fails validation.
(ATG)	 GA	1046-1129	GT	AGG
(GAG)	 AG	1337-1495	GT	AGG
(GGA)	 AG	1518-1577	GT	GGG
-recovered GeneMark_model.110014_t, initial, 1046, 1129
-recovered GeneMark_model.110014_t, internal, 1337, 1495
-recovered GeneMark_model.110014_t, internal, 1518, 1577
Couldn't classify 1337, 1495
Sorry, prediction Augustus_model.g41943.t1 fails validation.
(ATG)	 TC	1016-1129	GT	AGG
(GAG)	 AG	1337-1495	GT	AGG
-recovered Augustus_model.g41943.t1, initial, 1016, 1129
-recovered Augustus_model.g41943.t1, internal, 1337, 1495

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 39, 308
Sorry, prediction snap_scaffold_2078-snap.1-T1 fails validation.
(GGA)	 AG	39-308	GT	GAG
-recovered snap_scaffold_2078-snap.1-T1, internal, 39, 308
Couldn't classify 1513, 1566
Sorry, prediction GeneMark_model.110013_t fails validation.
(ATG)	 CT	1160-1218	GT	GGG
(GAG)	 AG	1264-1287	GT	GAG
(AGA)	 AG	1513-1566	GT	GAG
-recovered GeneMark_model.110013_t, initial, 1160, 1218
-recovered GeneMark_model.110013_t, internal, 1264, 1287
-recovered GeneMark_model.110013_t, internal, 1513, 1566

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1603
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support