-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2075

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 174, 184
Couldn't classify 1378, 1383
Sorry, prediction GeneMark_model.110009_t fails validation.
(GAC)	 AG	174-184	GT	GAG
(GGG)	 AG	207-234	GT	CGG
(CCC)	 AG	287-429	GT	CAG
(GAG)	 AG	522-617	GT	GGG
(GAG)	 AG	642-678	GT	GGG
(TGT)	 AG	1181-1296	GT	GGG
(GCA)	 AG	1319-1351	GT	AGG
(GAG)	 AG	1378-1383	GT	GGG
-recovered GeneMark_model.110009_t, internal, 174, 184
-recovered GeneMark_model.110009_t, internal, 207, 234
-recovered GeneMark_model.110009_t, internal, 287, 429
-recovered GeneMark_model.110009_t, internal, 522, 617
-recovered GeneMark_model.110009_t, internal, 642, 678
-recovered GeneMark_model.110009_t, internal, 1181, 1296
-recovered GeneMark_model.110009_t, internal, 1319, 1351
-recovered GeneMark_model.110009_t, internal, 1378, 1383
Valid prediction for snap_scaffold_2075-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62965-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1608
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support