-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2074

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 280, 371
Couldn't classify 1120, 1256
Sorry, prediction GeneMark_model.110008_t fails validation.
(TCT)	 AG	280-371	GT	GGG
(AAC)	 AG	472-672	GT	CAG
(ACG)	 AG	1120-1256	GT	AGG
-recovered GeneMark_model.110008_t, internal, 280, 371
-recovered GeneMark_model.110008_t, internal, 472, 672
-recovered GeneMark_model.110008_t, internal, 1120, 1256
Couldn't classify 267, 371
Couldn't classify 1120, 1257
Sorry, prediction pasa_asmbl_27280.p1 fails validation.
(TGT)	 CC	267-371	GT	GGG
(AAC)	 AG	472-672	GT	CAG
(ACG)	 AG	1120-1257	TG	GGT
-recovered pasa_asmbl_27280.p1, internal, 472, 672
Couldn't classify 261, 371
Sorry, prediction Augustus_model.g41942.t1 fails validation.
(AGT)	 AG	261-371	GT	GGG
(AAC)	 AG	472-672	GT	CAG
(ACG)	 AG	1120-1256	GT	AGG
(GCT)	 AG	1501-1567	TG	AGT
-recovered Augustus_model.g41942.t1, terminal, 1501, 1567
-recovered Augustus_model.g41942.t1, internal, 261, 371
-recovered Augustus_model.g41942.t1, internal, 472, 672
-recovered Augustus_model.g41942.t1, internal, 1120, 1256
Couldn't classify 261, 371
Sorry, prediction GlimmerHMM_glimmerT_62964-T1 fails validation.
(AGT)	 AG	261-371	GT	GGG
(AAC)	 AG	472-672	GT	CAG
(ACG)	 AG	1120-1260	GT	GAG
-recovered GlimmerHMM_glimmerT_62964-T1, terminal, 1120, 1260
-recovered GlimmerHMM_glimmerT_62964-T1, internal, 261, 371
-recovered GlimmerHMM_glimmerT_62964-T1, internal, 472, 672
-recovered GlimmerHMM_glimmerT_62964-T1, internal, 1120, 1260
Couldn't classify 261, 371
Couldn't classify 1120, 1256
Sorry, prediction snap_scaffold_2074-snap.1-T1 fails validation.
(AGT)	 AG	261-371	GT	GGG
(AAC)	 AG	472-672	GT	CAG
(ACG)	 AG	1120-1256	GT	AGG
-recovered snap_scaffold_2074-snap.1-T1, internal, 261, 371
-recovered snap_scaffold_2074-snap.1-T1, internal, 472, 672
-recovered snap_scaffold_2074-snap.1-T1, internal, 1120, 1256

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1608
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support