-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2072

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 71, 193
Sorry, prediction Augustus_model.g41941.t1 fails validation.
(CAC)	 AG	71-193	GT	CAG
(GCA)	 AG	651-776	AC	AAA
-recovered Augustus_model.g41941.t1, terminal, 651, 776
-recovered Augustus_model.g41941.t1, internal, 71, 193
Couldn't classify 1155, 1237
Sorry, prediction snap_scaffold_2072-snap.2-T1 fails validation.
(ATG)	 AC	822-918	GT	TGG
(GCG)	 AG	1155-1237	GT	TTG
-recovered snap_scaffold_2072-snap.2-T1, initial, 822, 918
-recovered snap_scaffold_2072-snap.2-T1, internal, 1155, 1237
Couldn't classify 71, 202
Couldn't classify 1575, 1601
Sorry, prediction GeneMark_model.110006_t fails validation.
(CAC)	 AG	71-202	GT	ACG
(GCA)	 AG	651-683	GT	CGG
(GAG)	 AG	725-906	GT	GGG
(GGG)	 AG	949-972	GT	GAG
(GGT)	 AG	998-1012	GT	AGG
(ACA)	 AG	1280-1291	GT	AAG
(AGG)	 AG	1575-1601	GT	GAG
-recovered GeneMark_model.110006_t, terminal, 1280, 1291
-recovered GeneMark_model.110006_t, internal, 71, 202
-recovered GeneMark_model.110006_t, internal, 651, 683
-recovered GeneMark_model.110006_t, internal, 725, 906
-recovered GeneMark_model.110006_t, internal, 949, 972
-recovered GeneMark_model.110006_t, internal, 998, 1012
-recovered GeneMark_model.110006_t, internal, 1280, 1291
-recovered GeneMark_model.110006_t, internal, 1575, 1601
Couldn't classify 94, 202
Sorry, prediction snap_scaffold_2072-snap.1-T1 fails validation.
(ACC)	 AG	94-202	GT	ACG
(GCA)	 AG	651-776	AC	AAA
-recovered snap_scaffold_2072-snap.1-T1, terminal, 651, 776
-recovered snap_scaffold_2072-snap.1-T1, internal, 94, 202

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62963-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62963-T1 415-581-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1610
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support