-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_207

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106935_t
Valid prediction for snap_scaffold_207-snap.2-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GeneMark_model.106936_t
Couldn't classify 8947, 9081
Sorry, prediction snap_scaffold_207-snap.3-T1 fails validation.
(ATG)	 AC	6650-6737	GT	AGG
(GTT)	 AG	8947-9081	GT	GGG
-recovered snap_scaffold_207-snap.3-T1, initial, 6650, 6737
-recovered snap_scaffold_207-snap.3-T1, internal, 8947, 9081

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 619, 658
Sorry, prediction GeneMark_model.106937_t fails validation.
(CTC)	 AG	619-658	GT	ACG
(GGA)	 AG	732-749	GT	GAG
(AGA)	 AG	792-858	GA	GAG
-recovered GeneMark_model.106937_t, terminal, 792, 858
-recovered GeneMark_model.106937_t, internal, 619, 658
-recovered GeneMark_model.106937_t, internal, 732, 749
Couldn't classify 1714, 1781
Sorry, prediction GlimmerHMM_glimmerT_61505-T1 fails validation.
(GAG)	 AG	1714-1781	GT	TGG
(ATG)	 AG	2224-2369	GT	AGG
(ATC)	 AG	3495-4265	AA	GAA
add_exon() Sorry, GlimmerHMM_glimmerT_61505-T1 2224-2369-initial-1 is invalid.
-recovered GlimmerHMM_glimmerT_61505-T1, initial, 2224, 2369
-recovered GlimmerHMM_glimmerT_61505-T1, terminal, 3495, 4265
-recovered GlimmerHMM_glimmerT_61505-T1, internal, 1714, 1781
-recovered GlimmerHMM_glimmerT_61505-T1, internal, 2224, 2369
Valid prediction for Augustus_model.g40905.t1
Couldn't classify 619, 658
Sorry, prediction snap_scaffold_207-snap.1-T1 fails validation.
(CTC)	 AG	619-658	GT	ACG
(GAG)	 AG	1714-1781	GT	TGG
(ATG)	 AG	2224-2369	GT	AGG
(ATC)	 AG	3495-4257	GT	CAG
(GAC)	 AG	5345-5655	GT	AAG
add_exon() Sorry, snap_scaffold_207-snap.1-T1 2224-2369-initial-1 is invalid.
-recovered snap_scaffold_207-snap.1-T1, initial, 2224, 2369
-recovered snap_scaffold_207-snap.1-T1, terminal, 5345, 5655
-recovered snap_scaffold_207-snap.1-T1, internal, 619, 658
-recovered snap_scaffold_207-snap.1-T1, internal, 1714, 1781
-recovered snap_scaffold_207-snap.1-T1, internal, 2224, 2369
-recovered snap_scaffold_207-snap.1-T1, internal, 3495, 4257
-recovered snap_scaffold_207-snap.1-T1, internal, 5345, 5655
Couldn't classify 2352, 2369
Couldn't classify 3495, 4205
Sorry, prediction pasa_asmbl_27278.p1 fails validation.
(GAG)	 AC	2352-2369	GT	AGG
(ATC)	 AG	3495-4205	AA	AGA

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9026, rend_intergenic: 4521  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9644
-exon list size: 37


building trellis

2.6    
5.1    
7.7    
10.3    
12.8    
15.4    
17.9    
20.5    
23.1    
25.6    
28.2    
30.8    
33.3    
35.9    
38.5    
41.0    
43.6    
46.2    
48.7    
51.3    
53.8    
56.4    
59.0    
61.5    
64.1    
66.7    
69.2    
71.8    
74.4    
76.9    
79.5    
82.1    
84.6    
87.2    
89.7    
92.3    
94.9    
97.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 9026, rend_intergenic: 4521  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support