-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2069

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_2069-snap.1-T1
Valid prediction for snap_scaffold_2069-snap.2-T1
Couldn't classify 78, 87
Couldn't classify 1360, 1378
Sorry, prediction GeneMark_model.110004_t fails validation.
(AGG)	 AG	78-87	GT	GGG
(AAG)	 AG	110-151	GT	GGG
(TGT)	 AG	181-237	GT	CAG
(AGG)	 AG	498-545	GT	GGG
(GGA)	 AG	751-834	GT	GGG
(TCT)	 AG	874-906	GT	GTG
(GGT)	 AG	953-961	GT	AGG
(CAA)	 AG	1073-1213	GT	GAG
(GGG)	 AG	1233-1331	GT	GGG
(GGG)	 AG	1360-1378	GT	CAG
-recovered GeneMark_model.110004_t, internal, 78, 87
-recovered GeneMark_model.110004_t, internal, 110, 151
-recovered GeneMark_model.110004_t, internal, 181, 237
-recovered GeneMark_model.110004_t, internal, 498, 545
-recovered GeneMark_model.110004_t, internal, 751, 834
-recovered GeneMark_model.110004_t, internal, 874, 906
-recovered GeneMark_model.110004_t, internal, 953, 961
-recovered GeneMark_model.110004_t, internal, 1073, 1213
-recovered GeneMark_model.110004_t, internal, 1233, 1331
-recovered GeneMark_model.110004_t, internal, 1360, 1378

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1613
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support