-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2064

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 661, 1279
Sorry, prediction GeneMark_model.109997_t fails validation.
(ATG)	 GG	285-295	GT	GAG
(GTA)	 AG	661-1279	GT	AGG
-recovered GeneMark_model.109997_t, initial, 285, 295
-recovered GeneMark_model.109997_t, internal, 661, 1279
Couldn't classify 661, 1279
Sorry, prediction snap_scaffold_2064-snap.1-T1 fails validation.
(GTA)	 AG	661-1279	GT	AGG
-recovered snap_scaffold_2064-snap.1-T1, internal, 661, 1279
Valid prediction for GlimmerHMM_glimmerT_62958-T1
Couldn't classify 659, 958
Couldn't classify 1082, 1279
Sorry, prediction pasa_asmbl_27276.p3 fails validation.
(AGG)	 TC	659-958	GT	AGG
(GGC)	 AG	1082-1279	GT	AGG
-recovered pasa_asmbl_27276.p3, internal, 1082, 1279
Couldn't classify 661, 958
Couldn't classify 1082, 1279
Sorry, prediction Augustus_model.g41938.t1 fails validation.
(GTA)	 AG	661-958	GT	AGG
(GGC)	 AG	1082-1279	GT	AGG
-recovered Augustus_model.g41938.t1, internal, 661, 958
-recovered Augustus_model.g41938.t1, internal, 1082, 1279

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1616
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support