-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2063

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.109995_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 63, 278
Couldn't classify 1237, 1381
Sorry, prediction snap_scaffold_2063-snap.1-T1 fails validation.
(TCC)	 AG	63-278	GT	GGG
(GGC)	 AG	790-974	GT	AGG
(CAT)	 AG	1237-1381	GT	AGG
-recovered snap_scaffold_2063-snap.1-T1, internal, 63, 278
-recovered snap_scaffold_2063-snap.1-T1, internal, 790, 974
-recovered snap_scaffold_2063-snap.1-T1, internal, 1237, 1381
Couldn't classify 1237, 1381
Sorry, prediction Augustus_model.g41937.t1 fails validation.
(ATG)	 CC	24-278	GT	GGG
(GGC)	 AG	790-974	GT	AGG
(CAT)	 AG	1237-1381	GT	AGG
-recovered Augustus_model.g41937.t1, initial, 24, 278
-recovered Augustus_model.g41937.t1, internal, 790, 974
-recovered Augustus_model.g41937.t1, internal, 1237, 1381
Couldn't classify 30, 278
Couldn't classify 1237, 1381
Sorry, prediction pasa_asmbl_27275.p1 fails validation.
(CAG)	 GA	30-278	GT	GGG
(GGC)	 AG	790-974	GT	AGG
(CAT)	 AG	1237-1381	GT	AGG
-recovered pasa_asmbl_27275.p1, internal, 790, 974
-recovered pasa_asmbl_27275.p1, internal, 1237, 1381
Valid prediction for GeneMark_model.109996_t
Valid prediction for GeneMark_model.109994_t
Valid prediction for GlimmerHMM_glimmerT_62957-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1617
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support