-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2060

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 392, 483
Sorry, prediction snap_scaffold_2060-snap.1-T1 fails validation.
(CTC)	 AG	392-483	GT	GGG
(AGG)	 AG	1151-1261	GG	GAG
-recovered snap_scaffold_2060-snap.1-T1, terminal, 1151, 1261
-recovered snap_scaffold_2060-snap.1-T1, internal, 392, 483

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 571, 633
Sorry, prediction GeneMark_model.109991_t fails validation.
(GAG)	 AG	571-633	GT	GGG
(GGC)	 AG	657-758	GT	AGG
(AAA)	 AG	790-798	GT	CAG
(TAA)	 AG	820-840	GT	AGG
(AGA)	 AG	879-896	GT	CTG
(AGA)	 AG	920-958	GT	AGG
(GAA)	 AG	991-1032	GT	AGG
(AGA)	 AG	1067-1190	GT	GAG
(CTG)	 AG	1229-1239	GT	GGG
(GGG)	 AG	1294-1320	GT	GGG
(AGA)	 AG	1350-1356	GG	AGG
-recovered GeneMark_model.109991_t, terminal, 1350, 1356
-recovered GeneMark_model.109991_t, internal, 571, 633
-recovered GeneMark_model.109991_t, internal, 657, 758
-recovered GeneMark_model.109991_t, internal, 790, 798
-recovered GeneMark_model.109991_t, internal, 820, 840
-recovered GeneMark_model.109991_t, internal, 879, 896
-recovered GeneMark_model.109991_t, internal, 920, 958
-recovered GeneMark_model.109991_t, internal, 991, 1032
-recovered GeneMark_model.109991_t, internal, 1067, 1190
-recovered GeneMark_model.109991_t, internal, 1229, 1239
-recovered GeneMark_model.109991_t, internal, 1294, 1320

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1619
-exon list size: 28


building trellis

3.3    
6.7    
10.0    
13.3    
16.7    
20.0    
23.3    
26.7    
30.0    
33.3    
36.7    
40.0    
43.3    
46.7    
50.0    
53.3    
56.7    
60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support