-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2059

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 353, 367
Couldn't classify 916, 975
Sorry, prediction GeneMark_model.109990_t fails validation.
(AGA)	 AG	353-367	GT	GAG
(AGT)	 AG	391-399	GT	GAG
(AGA)	 AG	421-495	GT	GAG
(TGA)	 AG	521-535	GT	GAG
(AGA)	 AG	559-567	GT	GAG
(AGA)	 AG	593-619	GT	ATG
(ACC)	 AG	916-975	GT	CAG
-recovered GeneMark_model.109990_t, internal, 353, 367
-recovered GeneMark_model.109990_t, internal, 391, 399
-recovered GeneMark_model.109990_t, internal, 421, 495
-recovered GeneMark_model.109990_t, internal, 521, 535
-recovered GeneMark_model.109990_t, internal, 559, 567
-recovered GeneMark_model.109990_t, internal, 593, 619
-recovered GeneMark_model.109990_t, internal, 916, 975
Valid prediction for snap_scaffold_2059-snap.1-T1
add_exon() Sorry, snap_scaffold_2059-snap.1-T1 916-1168-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1620
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support