-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2053

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 934, 1023
Couldn't classify 1482, 1574
Sorry, prediction GeneMark_model.109985_t fails validation.
(ACC)	 AG	934-1023	GT	AGG
(AAG)	 AG	1482-1574	GT	CGG
-recovered GeneMark_model.109985_t, internal, 934, 1023
-recovered GeneMark_model.109985_t, internal, 1482, 1574
Couldn't classify 934, 1023
Sorry, prediction Augustus_model.g41932.t1 fails validation.
(ACC)	 AG	934-1023	GT	AGG
(AAG)	 AG	1482-1583	AC	GAA
-recovered Augustus_model.g41932.t1, terminal, 1482, 1583
-recovered Augustus_model.g41932.t1, internal, 934, 1023
Couldn't classify 934, 1023
Couldn't classify 1482, 1574
Sorry, prediction snap_scaffold_2053-snap.1-T1 fails validation.
(ACC)	 AG	934-1023	GT	AGG
(AAG)	 AG	1482-1574	GT	CGG
-recovered snap_scaffold_2053-snap.1-T1, internal, 934, 1023
-recovered snap_scaffold_2053-snap.1-T1, internal, 1482, 1574

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1627
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support