-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_205

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 8997, 9032
Sorry, prediction GeneMark_model.106930_t fails validation.
(ATG)	 CT	5728-5747	GT	GGG
(TGA)	 AG	6326-6334	GT	GAG
(AGA)	 AG	6597-6904	GT	TGG
(CCC)	 AG	8311-8366	GT	TGG
(GAG)	 AG	8804-8949	GC	CAG
(CCC)	 AG	8997-9032	GT	CTG
-recovered GeneMark_model.106930_t, initial, 5728, 5747
add_exon() Sorry, GeneMark_model.106930_t 6326-6334-terminal-1 is invalid.
-recovered GeneMark_model.106930_t, terminal, 6326, 6334
-recovered GeneMark_model.106930_t, internal, 6326, 6334
-recovered GeneMark_model.106930_t, internal, 6597, 6904
-recovered GeneMark_model.106930_t, internal, 8311, 8366
-recovered GeneMark_model.106930_t, internal, 8804, 8949
-recovered GeneMark_model.106930_t, internal, 8997, 9032
Valid prediction for GlimmerHMM_glimmerT_61503-T1
Valid prediction for snap_scaffold_205-snap.1-T1
Couldn't classify 8804, 8979
Sorry, prediction snap_scaffold_205-snap.2-T1 fails validation.
(ATG)	 AG	2044-2141	GT	GGG
(GAG)	 AG	8804-8979	GT	TAG
-recovered snap_scaffold_205-snap.2-T1, initial, 2044, 2141
-recovered snap_scaffold_205-snap.2-T1, internal, 2044, 2141
-recovered snap_scaffold_205-snap.2-T1, internal, 8804, 8979
Valid prediction for GeneMark_model.106927_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.106925_t
Couldn't classify 762, 813
Couldn't classify 5340, 5576
Sorry, prediction snap_scaffold_205-snap.3-T1 fails validation.
(GAA)	 AG	762-813	GT	TGG
(AGG)	 AG	1288-1379	GT	AGG
(CCA)	 AG	5340-5576	GT	AGG
-recovered snap_scaffold_205-snap.3-T1, internal, 762, 813
-recovered snap_scaffold_205-snap.3-T1, internal, 1288, 1379
-recovered snap_scaffold_205-snap.3-T1, internal, 5340, 5576
Valid prediction for GeneMark_model.106929_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8979, rend_intergenic: 4122  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9697
-exon list size: 42


building trellis

2.3    
4.5    
6.8    
9.1    
11.4    
13.6    
15.9    
18.2    
20.5    
22.7    
25.0    
27.3    
29.5    
31.8    
34.1    
36.4    
38.6    
40.9    
43.2    
45.5    
47.7    
50.0    
52.3    
54.5    
56.8    
59.1    
61.4    
63.6    
65.9    
68.2    
70.5    
72.7    
75.0    
77.3    
79.5    
81.8    
84.1    
86.4    
88.6    
90.9    
93.2    
95.5    
97.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 8979, rend_intergenic: 4122  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support