-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2049

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 500, 556
Sorry, prediction GeneMark_model.109982_t fails validation.
(GGG)	 AG	500-556	GT	GGG
(TGG)	 AG	585-641	GT	ATG
(AGA)	 AG	665-670	GT	AGG
(GAT)	 AG	693-758	GT	GTG
(TGT)	 AG	780-824	GT	GTG
(TGT)	 AG	846-866	GT	AAG
(TGT)	 AG	890-985	GT	CCG
(AAA)	 AG	1365-1373	GT	GTG
(ACA)	 AG	1492-1597	AG	AGA
-recovered GeneMark_model.109982_t, terminal, 1492, 1597
-recovered GeneMark_model.109982_t, internal, 500, 556
-recovered GeneMark_model.109982_t, internal, 585, 641
-recovered GeneMark_model.109982_t, internal, 665, 670
-recovered GeneMark_model.109982_t, internal, 693, 758
-recovered GeneMark_model.109982_t, internal, 780, 824
-recovered GeneMark_model.109982_t, internal, 846, 866
-recovered GeneMark_model.109982_t, internal, 890, 985
-recovered GeneMark_model.109982_t, internal, 1365, 1373

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1632
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support