-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2048

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1414, 1534
Sorry, prediction GlimmerHMM_glimmerT_62952-T1 fails validation.
(ATG)	 AG	232-300	GT	AGG
(GAA)	 AG	1414-1534	GT	GTG
-recovered GlimmerHMM_glimmerT_62952-T1, initial, 232, 300
-recovered GlimmerHMM_glimmerT_62952-T1, internal, 232, 300
-recovered GlimmerHMM_glimmerT_62952-T1, internal, 1414, 1534
Couldn't classify 226, 300
Couldn't classify 1414, 1556
Sorry, prediction Augustus_model.g41929.t1 fails validation.
(GTG)	 AG	226-300	GT	AGG
(GAA)	 AG	1414-1556	GT	AGG
-recovered Augustus_model.g41929.t1, internal, 226, 300
-recovered Augustus_model.g41929.t1, internal, 1414, 1556
Couldn't classify 226, 300
Couldn't classify 1414, 1556
Sorry, prediction snap_scaffold_2048-snap.1-T1 fails validation.
(GTG)	 AG	226-300	GT	AGG
(GAA)	 AG	1414-1556	GT	AGG
-recovered snap_scaffold_2048-snap.1-T1, internal, 226, 300
-recovered snap_scaffold_2048-snap.1-T1, internal, 1414, 1556

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 540, 606
Sorry, prediction GeneMark_model.109981_t fails validation.
(ATG)	 AC	413-516	GT	AGG
(GAA)	 AG	540-606	GT	AGG
-recovered GeneMark_model.109981_t, initial, 413, 516
-recovered GeneMark_model.109981_t, internal, 540, 606

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1633
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support