-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2046

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 212, 370
Couldn't classify 1019, 1144
Sorry, prediction Augustus_model.g41928.t1 fails validation.
(GAC)	 AG	212-370	GT	AGG
(GAC)	 AG	722-883	GT	AGG
(TGG)	 AG	1019-1144	GT	GGG
-recovered Augustus_model.g41928.t1, internal, 212, 370
-recovered Augustus_model.g41928.t1, internal, 722, 883
-recovered Augustus_model.g41928.t1, internal, 1019, 1144
Couldn't classify 212, 370
Couldn't classify 1019, 1144
Sorry, prediction snap_scaffold_2046-snap.1-T1 fails validation.
(GAC)	 AG	212-370	GT	AGG
(GAC)	 AG	722-883	GT	AGG
(TGG)	 AG	1019-1144	GT	GGG
-recovered snap_scaffold_2046-snap.1-T1, internal, 212, 370
-recovered snap_scaffold_2046-snap.1-T1, internal, 722, 883
-recovered snap_scaffold_2046-snap.1-T1, internal, 1019, 1144
Couldn't classify 722, 883
Sorry, prediction GlimmerHMM_glimmerT_62951-T1 fails validation.
(ATG)	 GC	227-370	GT	AGG
(GAC)	 AG	722-883	GT	AGG
-recovered GlimmerHMM_glimmerT_62951-T1, initial, 227, 370
-recovered GlimmerHMM_glimmerT_62951-T1, internal, 722, 883
Couldn't classify 212, 370
Sorry, prediction GeneMark_model.109980_t fails validation.
(GAC)	 AG	212-370	GT	AGG
(GAC)	 AG	722-883	GT	AGG
(TGC)	 AG	1119-1144	GT	GGG
(GGG)	 AG	1168-1246	CT	GAC
-recovered GeneMark_model.109980_t, terminal, 1168, 1246
-recovered GeneMark_model.109980_t, internal, 212, 370
-recovered GeneMark_model.109980_t, internal, 722, 883
-recovered GeneMark_model.109980_t, internal, 1119, 1144

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1634
-exon list size: 8


building trellis

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50.0    
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70.0    
80.0    
90.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support