-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2045

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 423, 567
Sorry, prediction snap_scaffold_2045-snap.1-T1 fails validation.
(GTG)	 AG	423-567	GT	TGG
(AAA)	 AG	700-908	CT	GAC
-recovered snap_scaffold_2045-snap.1-T1, terminal, 700, 908
-recovered snap_scaffold_2045-snap.1-T1, internal, 423, 567

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 34, 58
Sorry, prediction GeneMark_model.109979_t fails validation.
(AGG)	 AG	34-58	GT	GAG
(GCA)	 AG	782-905	GT	AAG
(GCC)	 AG	1200-1248	GT	GAG
(AGG)	 AG	1344-1473	TA	AAT
-recovered GeneMark_model.109979_t, terminal, 1344, 1473
-recovered GeneMark_model.109979_t, internal, 34, 58
-recovered GeneMark_model.109979_t, internal, 782, 905
-recovered GeneMark_model.109979_t, internal, 1200, 1248
Valid prediction for GlimmerHMM_glimmerT_62950-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1637
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support