-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2044

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 169, 286
Couldn't classify 1391, 1514
Sorry, prediction snap_scaffold_2044-snap.1-T1 fails validation.
(GGA)	 AG	169-286	GT	AGG
(CTG)	 AG	429-562	GT	AAG
(ATA)	 AG	1391-1514	GT	AGG
-recovered snap_scaffold_2044-snap.1-T1, internal, 169, 286
-recovered snap_scaffold_2044-snap.1-T1, internal, 429, 562
-recovered snap_scaffold_2044-snap.1-T1, internal, 1391, 1514
Couldn't classify 169, 286
Sorry, prediction GlimmerHMM_glimmerT_62949-T1 fails validation.
(GGA)	 AG	169-286	GT	AGG
(CTG)	 AG	429-562	GT	AAG
(ATA)	 AG	1391-1523	GA	GAG
-recovered GlimmerHMM_glimmerT_62949-T1, terminal, 1391, 1523
-recovered GlimmerHMM_glimmerT_62949-T1, internal, 169, 286
-recovered GlimmerHMM_glimmerT_62949-T1, internal, 429, 562
Couldn't classify 169, 286
Couldn't classify 1391, 1514
Sorry, prediction GeneMark_model.109978_t fails validation.
(GGA)	 AG	169-286	GT	AGG
(CTG)	 AG	429-562	GT	AAG
(GTG)	 AG	769-840	GT	GGG
(GGG)	 AG	867-953	GT	GGG
(ATG)	 AG	1029-1076	GT	GGG
(GTG)	 AG	1101-1106	GT	GAG
(ATA)	 AG	1391-1514	GT	AGG
-recovered GeneMark_model.109978_t, initial, 1029, 1076
-recovered GeneMark_model.109978_t, internal, 169, 286
-recovered GeneMark_model.109978_t, internal, 429, 562
-recovered GeneMark_model.109978_t, internal, 769, 840
-recovered GeneMark_model.109978_t, internal, 867, 953
-recovered GeneMark_model.109978_t, internal, 1029, 1076
-recovered GeneMark_model.109978_t, internal, 1101, 1106
-recovered GeneMark_model.109978_t, internal, 1391, 1514
Couldn't classify 169, 286
Couldn't classify 1391, 1514
Sorry, prediction Augustus_model.g41927.t1 fails validation.
(GGA)	 AG	169-286	GT	AGG
(CTG)	 AG	429-562	GT	AAG
(ATA)	 AG	1391-1514	GT	AGG
-recovered Augustus_model.g41927.t1, internal, 169, 286
-recovered Augustus_model.g41927.t1, internal, 429, 562
-recovered Augustus_model.g41927.t1, internal, 1391, 1514

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1637
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support