-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2043

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 797, 1009
Couldn't classify 1481, 1486
Sorry, prediction GeneMark_model.109977_t fails validation.
(CCA)	 AG	797-1009	GT	AAG
(CCA)	 AG	1035-1437	GT	ACG
(AAG)	 AG	1481-1486	GT	GAG
add_exon() Sorry, GeneMark_model.109977_t 797-1009-terminal-1 is invalid.
-recovered GeneMark_model.109977_t, terminal, 797, 1009
-recovered GeneMark_model.109977_t, internal, 797, 1009
-recovered GeneMark_model.109977_t, internal, 1035, 1437
-recovered GeneMark_model.109977_t, internal, 1481, 1486
Couldn't classify 1237, 1437
Sorry, prediction snap_scaffold_2043-snap.1-T1 fails validation.
(CCC)	 AG	1237-1437	GT	ACG
-recovered snap_scaffold_2043-snap.1-T1, internal, 1237, 1437

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1637
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support