-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2041

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 176, 231
Sorry, prediction snap_scaffold_2041-snap.1-T1 fails validation.
(GTA)	 AG	176-231	GT	AGG
(ATC)	 AG	626-783	GT	CGG
(GCC)	 AG	1142-1331	CC	AGC
-recovered snap_scaffold_2041-snap.1-T1, terminal, 1142, 1331
-recovered snap_scaffold_2041-snap.1-T1, internal, 176, 231
-recovered snap_scaffold_2041-snap.1-T1, internal, 626, 783
Couldn't classify 176, 231
Sorry, prediction Augustus_model.g41925.t1 fails validation.
(GTA)	 AG	176-231	GT	AGG
(ATC)	 AG	626-783	GT	CGG
(GCC)	 AG	1142-1331	CC	AGC
-recovered Augustus_model.g41925.t1, terminal, 1142, 1331
-recovered Augustus_model.g41925.t1, internal, 176, 231
-recovered Augustus_model.g41925.t1, internal, 626, 783
Valid prediction for GlimmerHMM_glimmerT_62948-T1
Couldn't classify 196, 231
Couldn't classify 1142, 1322
Sorry, prediction pasa_asmbl_27272.p1 fails validation.
(GTG)	 AA	196-231	GT	AGG
(ATC)	 AG	626-783	GT	CGG
(GCC)	 AG	1142-1322	GA	CCG
-recovered pasa_asmbl_27272.p1, internal, 626, 783
Couldn't classify 33, 142
Couldn't classify 1265, 1551
Sorry, prediction GeneMark_model.109976_t fails validation.
(GGG)	 AG	33-142	GT	AGG
(GTA)	 AG	176-231	GT	AGG
(ATC)	 AG	626-783	GT	CGG
(GCC)	 AG	1142-1239	GT	GAG
(AGA)	 AG	1265-1551	GT	ATG
-recovered GeneMark_model.109976_t, internal, 33, 142
-recovered GeneMark_model.109976_t, internal, 176, 231
-recovered GeneMark_model.109976_t, internal, 626, 783
-recovered GeneMark_model.109976_t, internal, 1142, 1239
-recovered GeneMark_model.109976_t, internal, 1265, 1551

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1639
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support