-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_204

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61501-T1
Couldn't classify 40, 52
Sorry, prediction GeneMark_model.106921_t fails validation.
(AGG)	 AG	40-52	GT	AGG
(CCC)	 AG	524-693	GT	TGG
(GAG)	 AG	3646-3676	GT	AAG
(GGG)	 AG	3820-3893	GT	GGG
(GGC)	 AG	3925-3957	GT	AGG
(GGT)	 AG	3980-4059	GT	GTG
(GCT)	 AG	4153-4204	GT	CGG
(AGA)	 AG	4475-4514	GC	AAG
-recovered GeneMark_model.106921_t, terminal, 4475, 4514
-recovered GeneMark_model.106921_t, internal, 40, 52
-recovered GeneMark_model.106921_t, internal, 524, 693
-recovered GeneMark_model.106921_t, internal, 3646, 3676
-recovered GeneMark_model.106921_t, internal, 3820, 3893
-recovered GeneMark_model.106921_t, internal, 3925, 3957
-recovered GeneMark_model.106921_t, internal, 3980, 4059
-recovered GeneMark_model.106921_t, internal, 4153, 4204
-recovered GeneMark_model.106921_t, internal, 4475, 4514
Valid prediction for GeneMark_model.106922_t
Couldn't classify 9498, 9570
Sorry, prediction Augustus_model.g40903.t1 fails validation.
(ATG)	 CG	5738-5862	GT	CCG
(AGC)	 AG	7275-7361	GT	CCG
(GTG)	 AG	8706-8802	GT	AGG
(ACC)	 AG	9498-9570	GT	AGG
-recovered Augustus_model.g40903.t1, initial, 5738, 5862
-recovered Augustus_model.g40903.t1, internal, 7275, 7361
-recovered Augustus_model.g40903.t1, internal, 8706, 8802
-recovered Augustus_model.g40903.t1, internal, 9498, 9570
Valid prediction for snap_scaffold_204-snap.4-T1
Couldn't classify 8513, 8568
Sorry, prediction GeneMark_model.106924_t fails validation.
(ATG)	 CG	7786-7814	GT	CAG
(AGA)	 AG	7938-7985	GT	TTG
(GGT)	 AG	8053-8070	GT	GGG
(GTG)	 AG	8093-8173	GT	GGG
(GAG)	 AG	8196-8219	GT	GAG
(AGA)	 AG	8243-8248	GT	ATG
(AGG)	 AG	8513-8568	GT	AAG
-recovered GeneMark_model.106924_t, initial, 7786, 7814
-recovered GeneMark_model.106924_t, internal, 7938, 7985
-recovered GeneMark_model.106924_t, internal, 8053, 8070
-recovered GeneMark_model.106924_t, internal, 8093, 8173
-recovered GeneMark_model.106924_t, internal, 8196, 8219
-recovered GeneMark_model.106924_t, internal, 8243, 8248
-recovered GeneMark_model.106924_t, internal, 8513, 8568
Valid prediction for snap_scaffold_204-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 9067, 9158
Sorry, prediction snap_scaffold_204-snap.2-T1 fails validation.
(ATG)	 CC	2889-2942	GT	AGG
(GGG)	 AG	3224-3595	GT	CGG
(GGG)	 AG	3773-3855	GT	CGG
(CCT)	 AG	5564-5706	GT	AGG
(GGG)	 AG	9067-9158	GT	AGG
-recovered snap_scaffold_204-snap.2-T1, initial, 2889, 2942
-recovered snap_scaffold_204-snap.2-T1, internal, 3224, 3595
-recovered snap_scaffold_204-snap.2-T1, internal, 3773, 3855
-recovered snap_scaffold_204-snap.2-T1, internal, 5564, 5706
-recovered snap_scaffold_204-snap.2-T1, internal, 9067, 9158
Valid prediction for GlimmerHMM_glimmerT_61500-T1
Couldn't classify 817, 933
Sorry, prediction GlimmerHMM_glimmerT_61502-T1 fails validation.
(CAG)	 AG	817-933	GT	AGG
(GTC)	 AG	1918-2010	CC	GAC
-recovered GlimmerHMM_glimmerT_61502-T1, terminal, 1918, 2010
-recovered GlimmerHMM_glimmerT_61502-T1, internal, 817, 933
Valid prediction for snap_scaffold_204-snap.3-T1
Valid prediction for GeneMark_model.106923_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4901, rend_intergenic: 559  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9057, rend_intergenic: 7915  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9716
-exon list size: 66


building trellis

1.5    
2.9    
4.4    
5.9    
7.4    
8.8    
10.3    
11.8    
13.2    
14.7    
16.2    
17.6    
19.1    
20.6    
22.1    
23.5    
25.0    
26.5    
27.9    
29.4    
30.9    
32.4    
33.8    
35.3    
36.8    
38.2    
39.7    
41.2    
42.6    
44.1    
45.6    
47.1    
48.5    
50.0    
51.5    
52.9    
54.4    
55.9    
57.4    
58.8    
60.3    
61.8    
63.2    
64.7    
66.2    
67.6    
69.1    
70.6    
72.1    
73.5    
75.0    
76.5    
77.9    
79.4    
80.9    
82.4    
83.8    
85.3    
86.8    
88.2    
89.7    
91.2    
92.6    
94.1    
95.6    
97.1    
98.5    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 4901, rend_intergenic: 559  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9057, rend_intergenic: 7915  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support