-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2039

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 805, 885
Couldn't classify 1215, 1374
Sorry, prediction GeneMark_model.109975_t fails validation.
(AGG)	 AG	805-885	GT	GAG
(TGA)	 AG	918-944	GT	GAG
(AGA)	 AG	990-1004	GT	GAG
(TCT)	 AG	1040-1102	GT	AAG
(GAG)	 AG	1136-1156	GT	AGG
(AGA)	 AG	1215-1374	GT	CAG
-recovered GeneMark_model.109975_t, internal, 805, 885
-recovered GeneMark_model.109975_t, internal, 918, 944
-recovered GeneMark_model.109975_t, internal, 990, 1004
-recovered GeneMark_model.109975_t, internal, 1040, 1102
-recovered GeneMark_model.109975_t, internal, 1136, 1156
-recovered GeneMark_model.109975_t, internal, 1215, 1374

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1642
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support