-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2038

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 213, 446
Couldn't classify 1593, 1627
Sorry, prediction GeneMark_model.109974_t fails validation.
(GTA)	 AG	213-446	GT	AGG
(GTG)	 AG	830-936	GT	GAG
(GGG)	 AG	1529-1537	GT	GGG
(GGT)	 AG	1563-1568	GT	AGG
(GCT)	 AG	1593-1627	GT	GGG
-recovered GeneMark_model.109974_t, terminal, 1563, 1568
-recovered GeneMark_model.109974_t, internal, 213, 446
-recovered GeneMark_model.109974_t, internal, 830, 936
-recovered GeneMark_model.109974_t, internal, 1529, 1537
-recovered GeneMark_model.109974_t, internal, 1563, 1568
-recovered GeneMark_model.109974_t, internal, 1593, 1627
Couldn't classify 830, 936
Sorry, prediction GlimmerHMM_glimmerT_62947-T1 fails validation.
(ATG)	 CC	258-446	GT	AGG
(GTG)	 AG	830-936	GT	GAG
-recovered GlimmerHMM_glimmerT_62947-T1, initial, 258, 446
-recovered GlimmerHMM_glimmerT_62947-T1, internal, 830, 936
Couldn't classify 213, 446
Sorry, prediction Augustus_model.g41924.t1 fails validation.
(GTA)	 AG	213-446	GT	AGG
(GTG)	 AG	830-961	AT	AAA
-recovered Augustus_model.g41924.t1, terminal, 830, 961
-recovered Augustus_model.g41924.t1, internal, 213, 446
Couldn't classify 213, 446
Sorry, prediction snap_scaffold_2038-snap.1-T1 fails validation.
(GTA)	 AG	213-446	GT	AGG
(GTG)	 AG	830-961	AT	AAA
-recovered snap_scaffold_2038-snap.1-T1, terminal, 830, 961
-recovered snap_scaffold_2038-snap.1-T1, internal, 213, 446

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1643
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support