-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2035

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_2035-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_62944-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62944-T1 234-696-terminal-1 is invalid.
Valid prediction for snap_scaffold_2035-snap.1-T1
Valid prediction for Augustus_model.g41923.t1
Couldn't classify 17, 111
Couldn't classify 734, 1091
Sorry, prediction GeneMark_model.109972_t fails validation.
(TTC)	 AG	17-111	GT	CGG
(GAG)	 AG	133-651	GT	ACG
(CAT)	 AG	734-1091	GT	TGG
-recovered GeneMark_model.109972_t, internal, 17, 111
-recovered GeneMark_model.109972_t, internal, 133, 651
-recovered GeneMark_model.109972_t, internal, 734, 1091
Valid prediction for GlimmerHMM_glimmerT_62945-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1646
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support