-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2032

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 119, 758
Couldn't classify 1261, 1568
Sorry, prediction pasa_asmbl_27269.p1 fails validation.
(GGC)	 GG	119-758	GT	AGG
(ACG)	 AG	1261-1568	GC	ACG
-recovered pasa_asmbl_27269.p1, internal, 1261, 1568
Couldn't classify 62, 758
Sorry, prediction GeneMark_model.109970_t fails validation.
(GAC)	 AG	62-758	GT	AGG
(TCT)	 AG	821-825	GA	AAG
add_exon() Sorry, GeneMark_model.109970_t 62-758-terminal-3 is invalid.
-recovered GeneMark_model.109970_t, terminal, 62, 758
-recovered GeneMark_model.109970_t, terminal, 821, 825
-recovered GeneMark_model.109970_t, internal, 62, 758
Couldn't classify 62, 758
Sorry, prediction Augustus_model.g41922.t1 fails validation.
(GAC)	 AG	62-758	GT	AGG
(ACG)	 AG	1261-1583	CA	AGC
add_exon() Sorry, Augustus_model.g41922.t1 62-758-terminal-3 is invalid.
-recovered Augustus_model.g41922.t1, terminal, 62, 758
-recovered Augustus_model.g41922.t1, terminal, 1261, 1583
-recovered Augustus_model.g41922.t1, internal, 62, 758
Valid prediction for GlimmerHMM_glimmerT_62943-T1
Couldn't classify 62, 758
Couldn't classify 1261, 1578
Sorry, prediction snap_scaffold_2032-snap.1-T1 fails validation.
(GAC)	 AG	62-758	GT	AGG
(ACG)	 AG	1261-1578	GT	AGG
add_exon() Sorry, snap_scaffold_2032-snap.1-T1 62-758-terminal-3 is invalid.
-recovered snap_scaffold_2032-snap.1-T1, terminal, 62, 758
-recovered snap_scaffold_2032-snap.1-T1, internal, 62, 758
-recovered snap_scaffold_2032-snap.1-T1, internal, 1261, 1578

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 34, 522
Sorry, prediction GeneMark_model.109971_t fails validation.
(AGG)	 AG	34-522	GC	GAG
(AGG)	 AG	551-619	GT	AGG
(AGA)	 AG	645-747	GG	AGG
-recovered GeneMark_model.109971_t, terminal, 645, 747
-recovered GeneMark_model.109971_t, internal, 34, 522
-recovered GeneMark_model.109971_t, internal, 551, 619

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1650
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support