-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2031

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1592, 1618
Sorry, prediction GeneMark_model.109969_t fails validation.
(ATG)	 CC	810-833	GT	AGG
(TGT)	 AG	1294-1418	GT	GAG
(GGG)	 AG	1592-1618	GT	GGG
-recovered GeneMark_model.109969_t, initial, 810, 833
-recovered GeneMark_model.109969_t, internal, 1294, 1418
-recovered GeneMark_model.109969_t, internal, 1592, 1618

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 736, 925
Sorry, prediction snap_scaffold_2031-snap.1-T1 fails validation.
(GCT)	 AG	736-925	GT	GTG
(AAA)	 AG	1100-1120	TG	AGT
-recovered snap_scaffold_2031-snap.1-T1, terminal, 1100, 1120
-recovered snap_scaffold_2031-snap.1-T1, internal, 736, 925
Couldn't classify 1489, 1652
Sorry, prediction Augustus_model.g41921.t1 fails validation.
(ATG)	 CA	1489-1652		GA
Valid prediction for GeneMark_model.109968_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1652
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support