-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2030

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_2030-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_62941-T1
Valid prediction for Augustus_model.g41920.t1
Couldn't classify 12, 142
Sorry, prediction GeneMark_model.109967_t fails validation.
(GTT)	 AG	12-142	GT	AGG
-recovered GeneMark_model.109967_t, internal, 12, 142
Valid prediction for GlimmerHMM_glimmerT_62942-T1
Couldn't classify 1314, 1493
Sorry, prediction Augustus_model.g41919.t1 fails validation.
(ATG)	 TG	770-903	GT	GAG
(ACT)	 AG	1028-1223	GT	AGG
(GTT)	 AG	1314-1493	GT	AGG
-recovered Augustus_model.g41919.t1, initial, 770, 903
-recovered Augustus_model.g41919.t1, internal, 1028, 1223
-recovered Augustus_model.g41919.t1, internal, 1314, 1493
Couldn't classify 1314, 1493
Sorry, prediction snap_scaffold_2030-snap.1-T1 fails validation.
(ATG)	 AC	1134-1223	GT	AGG
(GTT)	 AG	1314-1493	GT	AGG
-recovered snap_scaffold_2030-snap.1-T1, initial, 1134, 1223
-recovered snap_scaffold_2030-snap.1-T1, internal, 1314, 1493

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1652
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support