-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_203

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_203-snap.5-T1
Valid prediction for snap_scaffold_203-snap.3-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 9500, 9643
Sorry, prediction Augustus_model.g40902.t1 fails validation.
(ATG)	 AC	4065-4104	GT	AGG
(GTT)	 AG	4530-4600	GT	AGG
(AGG)	 AG	5688-5752	GT	AGG
(CAA)	 AG	6712-6778	GT	AGG
(GGT)	 AG	7551-7669	GT	AGG
(GGA)	 AG	8004-8084	GT	AGG
(ACA)	 AG	8637-8749	GT	AGG
(ACA)	 AG	8997-9145	GT	CAG
(AAT)	 AG	9500-9643	GT	GGG
-recovered Augustus_model.g40902.t1, initial, 4065, 4104
-recovered Augustus_model.g40902.t1, internal, 4530, 4600
-recovered Augustus_model.g40902.t1, internal, 5688, 5752
-recovered Augustus_model.g40902.t1, internal, 6712, 6778
-recovered Augustus_model.g40902.t1, internal, 7551, 7669
-recovered Augustus_model.g40902.t1, internal, 8004, 8084
-recovered Augustus_model.g40902.t1, internal, 8637, 8749
-recovered Augustus_model.g40902.t1, internal, 8997, 9145
-recovered Augustus_model.g40902.t1, internal, 9500, 9643
Couldn't classify 648, 768
Sorry, prediction GlimmerHMM_glimmerT_61499-T1 fails validation.
(CTC)	 AG	648-768	GT	CGG
(AGG)	 AG	2634-2748	GT	AAG
(GTT)	 AG	4530-4600	GT	AGG
(AGG)	 AG	5688-5752	GT	AGG
(GAC)	 AG	6583-6649	CA	GAC
-recovered GlimmerHMM_glimmerT_61499-T1, terminal, 6583, 6649
-recovered GlimmerHMM_glimmerT_61499-T1, internal, 648, 768
-recovered GlimmerHMM_glimmerT_61499-T1, internal, 2634, 2748
-recovered GlimmerHMM_glimmerT_61499-T1, internal, 4530, 4600
-recovered GlimmerHMM_glimmerT_61499-T1, internal, 5688, 5752
Couldn't classify 9500, 9709
Sorry, prediction snap_scaffold_203-snap.1-T1 fails validation.
(ATG)	 TA	9421-9426	GT	CAG
(AAT)	 AG	9500-9709	GT	AGG
-recovered snap_scaffold_203-snap.1-T1, initial, 9421, 9426
-recovered snap_scaffold_203-snap.1-T1, internal, 9500, 9709
Couldn't classify 9660, 9665
Sorry, prediction GeneMark_model.106918_t fails validation.
(ATG)	 AG	7602-7669	GT	AGG
(GGA)	 AG	8004-8084	GT	AGG
(ACA)	 AG	8637-8749	GT	AGG
(ACA)	 AG	8997-9187	GT	ACG
(AAT)	 AG	9500-9636	GT	GGG
(GGG)	 AG	9660-9665	GT	AGG
-recovered GeneMark_model.106918_t, initial, 7602, 7669
-recovered GeneMark_model.106918_t, internal, 7602, 7669
-recovered GeneMark_model.106918_t, internal, 8004, 8084
-recovered GeneMark_model.106918_t, internal, 8637, 8749
-recovered GeneMark_model.106918_t, internal, 8997, 9187
-recovered GeneMark_model.106918_t, internal, 9500, 9636
-recovered GeneMark_model.106918_t, internal, 9660, 9665
Valid prediction for snap_scaffold_203-snap.4-T1
Valid prediction for snap_scaffold_203-snap.2-T1
Valid prediction for GeneMark_model.106920_t
Valid prediction for GeneMark_model.106919_t
Valid prediction for GlimmerHMM_glimmerT_61498-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4031, rend_intergenic: 1966  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9710, rend_intergenic: 7170  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9724
-exon list size: 47


building trellis

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49.0    
51.0    
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95.9    
98.0    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 4031, rend_intergenic: 1966  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9710, rend_intergenic: 7170  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support