-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2029

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1208, 1302
Sorry, prediction GeneMark_model.109965_t fails validation.
(ATG)	 GG	701-751	GT	GAG
(CCC)	 AG	841-889	GT	CAG
(CCA)	 AG	920-968	GT	CTG
(ACT)	 AG	1087-1156	GT	CTG
(GCA)	 AG	1208-1302	GT	GTG
-recovered GeneMark_model.109965_t, initial, 701, 751
-recovered GeneMark_model.109965_t, internal, 841, 889
-recovered GeneMark_model.109965_t, internal, 920, 968
-recovered GeneMark_model.109965_t, internal, 1087, 1156
-recovered GeneMark_model.109965_t, internal, 1208, 1302
Couldn't classify 35, 71
Sorry, prediction GeneMark_model.109966_t fails validation.
(CAA)	 AG	35-71	GT	AGG
(TCG)	 AG	234-243	GT	GGG
(GGT)	 AG	391-496	GT	AGG
(GGA)	 AG	563-635	GA	GAG
-recovered GeneMark_model.109966_t, terminal, 563, 635
-recovered GeneMark_model.109966_t, internal, 35, 71
-recovered GeneMark_model.109966_t, internal, 234, 243
-recovered GeneMark_model.109966_t, internal, 391, 496

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1654
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support