-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2027

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 631, 651
Couldn't classify 1338, 1350
Sorry, prediction GeneMark_model.109963_t fails validation.
(AAA)	 AG	631-651	GT	GAG
(AAG)	 AG	675-707	GT	GGG
(GAG)	 AG	731-784	GC	GAG
(AGA)	 AG	808-855	GT	AAG
(AGA)	 AG	903-911	GT	GGG
(GAG)	 AG	932-1096	GT	GGG
(AGG)	 AG	1250-1258	GT	ATG
(GAA)	 AG	1296-1310	GT	ATG
(TAA)	 AG	1338-1350	GT	AAG
-recovered GeneMark_model.109963_t, internal, 631, 651
-recovered GeneMark_model.109963_t, internal, 675, 707
-recovered GeneMark_model.109963_t, internal, 731, 784
-recovered GeneMark_model.109963_t, internal, 808, 855
-recovered GeneMark_model.109963_t, internal, 903, 911
-recovered GeneMark_model.109963_t, internal, 932, 1096
-recovered GeneMark_model.109963_t, internal, 1250, 1258
-recovered GeneMark_model.109963_t, internal, 1296, 1310
-recovered GeneMark_model.109963_t, internal, 1338, 1350

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1659
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support