-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2026

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 37, 102
Sorry, prediction GeneMark_model.109962_t fails validation.
(GAG)	 AG	37-102	GT	GGG
(AGC)	 AG	127-147	GT	AAG
(AGG)	 AG	172-384	GT	CAG
(GGG)	 AG	922-961	AG	AAA
-recovered GeneMark_model.109962_t, terminal, 922, 961
-recovered GeneMark_model.109962_t, internal, 37, 102
-recovered GeneMark_model.109962_t, internal, 127, 147
-recovered GeneMark_model.109962_t, internal, 172, 384

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1660
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support