-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2025

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 968, 1135
Sorry, prediction snap_scaffold_2025-snap.1-T1 fails validation.
(ATG)	 CT	828-850	GT	ATG
(CAT)	 AG	968-1135	GT	CGG
-recovered snap_scaffold_2025-snap.1-T1, initial, 828, 850
-recovered snap_scaffold_2025-snap.1-T1, internal, 968, 1135
Couldn't classify 121, 237
Sorry, prediction GeneMark_model.109960_t fails validation.
(GAA)	 AG	121-237	GT	AGG
(CAT)	 AG	968-1208	TT	GAT
-recovered GeneMark_model.109960_t, terminal, 968, 1208
-recovered GeneMark_model.109960_t, internal, 121, 237
Couldn't classify 121, 237
Sorry, prediction Augustus_model.g41917.t1 fails validation.
(GAA)	 AG	121-237	GT	AGG
(CAT)	 AG	968-1208	TT	GAT
-recovered Augustus_model.g41917.t1, terminal, 968, 1208
-recovered Augustus_model.g41917.t1, internal, 121, 237

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.109961_t
add_exon() Sorry, GeneMark_model.109961_t 239-359-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1661
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support