-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2023

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62940-T1
Valid prediction for snap_scaffold_2023-snap.1-T1
Couldn't classify 1101, 1292
Couldn't classify 1617, 1640
Sorry, prediction GeneMark_model.109959_t fails validation.
(AGG)	 AG	1101-1292	GT	CAG
(AGA)	 AG	1426-1443	GT	GGG
(GAG)	 AG	1617-1640	GT	GGG
-recovered GeneMark_model.109959_t, internal, 1101, 1292
-recovered GeneMark_model.109959_t, internal, 1426, 1443
-recovered GeneMark_model.109959_t, internal, 1617, 1640

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1661
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support