-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2022

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 492, 566
Sorry, prediction Augustus_model.g41916.t1 fails validation.
(CAC)	 AG	492-566	GT	GGG
(CAA)	 AG	1348-1623	CT	AGC
-recovered Augustus_model.g41916.t1, terminal, 1348, 1623
-recovered Augustus_model.g41916.t1, internal, 492, 566
Valid prediction for GlimmerHMM_glimmerT_62939-T1
Couldn't classify 492, 533
Sorry, prediction snap_scaffold_2022-snap.1-T1 fails validation.
(CAC)	 AG	492-533	GT	AGG
(CAA)	 AG	1348-1623	CT	AGC
-recovered snap_scaffold_2022-snap.1-T1, terminal, 1348, 1623
-recovered snap_scaffold_2022-snap.1-T1, internal, 492, 533

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 39, 310
Couldn't classify 340, 348
Sorry, prediction GeneMark_model.109958_t fails validation.
(CTA)	 AG	39-310	GT	CTG
(AGA)	 AG	340-348	GT	AAG
-recovered GeneMark_model.109958_t, internal, 39, 310
-recovered GeneMark_model.109958_t, internal, 340, 348

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1661
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support