-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2020

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1439, 1558
Sorry, prediction Augustus_model.g41915.t1 fails validation.
(ATG)	 AG	567-693	GT	AGG
(TGC)	 AG	1439-1558	GT	GTG
-recovered Augustus_model.g41915.t1, initial, 567, 693
-recovered Augustus_model.g41915.t1, internal, 567, 693
-recovered Augustus_model.g41915.t1, internal, 1439, 1558
Couldn't classify 109, 147
Couldn't classify 1449, 1558
Sorry, prediction GeneMark_model.109957_t fails validation.
(TTT)	 AG	109-147	GT	GGG
(GGT)	 AG	197-217	GT	GTG
(TTT)	 AG	309-317	GT	GTG
(TTT)	 AG	353-391	GT	GAG
(TTT)	 AG	453-491	GT	GAG
(GGG)	 AG	585-710	GT	ACG
(GAT)	 AG	1449-1558	GT	GTG
-recovered GeneMark_model.109957_t, internal, 109, 147
-recovered GeneMark_model.109957_t, internal, 197, 217
-recovered GeneMark_model.109957_t, internal, 309, 317
-recovered GeneMark_model.109957_t, internal, 353, 391
-recovered GeneMark_model.109957_t, internal, 453, 491
-recovered GeneMark_model.109957_t, internal, 585, 710
-recovered GeneMark_model.109957_t, internal, 1449, 1558

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1662
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support