-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2016

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 210, 246
Couldn't classify 1256, 1380
Sorry, prediction GeneMark_model.109953_t fails validation.
(TCC)	 AG	210-246	GT	CTG
(GTC)	 AG	458-477	GT	AGG
(AGG)	 AG	586-615	GT	GTG
(GGG)	 AG	944-997	GT	AGG
(GGA)	 AG	1026-1043	GT	AGG
(GAT)	 AG	1067-1117	GT	AGG
(AGA)	 AG	1138-1230	GT	GAG
(AGA)	 AG	1256-1380	GT	GGG
-recovered GeneMark_model.109953_t, internal, 210, 246
-recovered GeneMark_model.109953_t, internal, 458, 477
-recovered GeneMark_model.109953_t, internal, 586, 615
-recovered GeneMark_model.109953_t, internal, 944, 997
-recovered GeneMark_model.109953_t, internal, 1026, 1043
-recovered GeneMark_model.109953_t, internal, 1067, 1117
-recovered GeneMark_model.109953_t, internal, 1138, 1230
-recovered GeneMark_model.109953_t, internal, 1256, 1380
Couldn't classify 892, 1043
Couldn't classify 1448, 1525
Sorry, prediction snap_scaffold_2016-snap.1-T1 fails validation.
(AGA)	 AG	892-1043	GT	AGG
(GAC)	 AG	1448-1525	GT	GGG
-recovered snap_scaffold_2016-snap.1-T1, internal, 892, 1043
-recovered snap_scaffold_2016-snap.1-T1, internal, 1448, 1525

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1663
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support